Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08535

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
1,119,470	+		HMPREF1058_RS08540	0.64	+0.6
1,119,564	+		HMPREF1058_RS08540	0.71	+0.4
1,119,594	+		HMPREF1058_RS08540	0.74	-0.5
1,119,596	+		HMPREF1058_RS08540	0.74	-0.7
1,119,597	-		HMPREF1058_RS08540	0.74	+0.4
1,119,608	+		HMPREF1058_RS08540	0.75	+0.2
1,119,639	+		HMPREF1058_RS08540	0.77	-1.8
1,119,639	+		HMPREF1058_RS08540	0.77	+1.4
1,119,639	+		HMPREF1058_RS08540	0.77	-0.1
1,119,753	-		HMPREF1058_RS08540	0.87	+0.2
1,119,762	-		HMPREF1058_RS08540	0.87	-0.2
1,119,786	+				+0.6
1,119,824	-				-0.8
1,119,831	+				-1.9
1,119,832	-				+0.4
1,119,832	-				-2.0
1,119,834	-				-0.5
1,119,842	+				-0.7
1,119,856	-				-0.3
1,119,856	-				-0.0
1,119,916	-				+0.6
1,119,940	+				+1.1
1,119,961	+				-1.1
1,119,962	-				-1.0
1,119,996	-				-0.8
1,120,000	+				+1.5
1,120,001	-				-3.0
1,120,029	-				-1.3
1,120,040	+				-1.5
1,120,376	-				-0.1
1,120,404	+				-0.9
1,120,406	+				-0.5
1,120,406	+				-1.6
1,120,406	+				+0.5
1,120,407	-				-0.7
1,120,438	-				-1.0
1,120,571	-		HMPREF1058_RS08535	0.21	-1.1
1,120,641	+		HMPREF1058_RS08535	0.33	-2.6
1,120,642	-		HMPREF1058_RS08535	0.33	-0.8
1,120,667	+		HMPREF1058_RS08535	0.38	-1.1
1,120,673	+		HMPREF1058_RS08535	0.39	-3.1
1,120,856	-		HMPREF1058_RS08535	0.71	-0.6
1,120,997	+				-0.7
1,121,018	+				+0.6
1,121,018	+				+0.4
1,121,023	+				+0.1
1,121,027	+				+0.5
1,121,027	+				+2.2
1,121,028	-				-1.3
1,121,028	-				-0.0
1,121,030	-				-0.5
1,121,030	-				-2.1
1,121,031	+				+0.8
1,121,032	-				+0.1
1,121,032	-				-0.6
1,121,038	-				-2.8
1,121,039	+				-0.1
1,121,040	-				+0.8
1,121,075	+				+0.1
1,121,292	-		HMPREF1058_RS08530	0.17	+2.2
1,121,776	-		HMPREF1058_RS08530	0.66	-1.1