Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07650 and HMPREF1058_RS07645 are separated by 209 nucleotides HMPREF1058_RS07645 and HMPREF1058_RS07640 are separated by 2 nucleotides HMPREF1058_RS07640 and HMPREF1058_RS07635 are separated by 15 nucleotides HMPREF1058_RS07635 and HMPREF1058_RS07630 are separated by 69 nucleotides HMPREF1058_RS07630 and HMPREF1058_RS07625 are separated by 154 nucleotides
HMPREF1058_RS07650: HMPREF1058_RS07650 - MarR family transcriptional regulator, at 170,143 to 170,589
_RS07650
HMPREF1058_RS07645: HMPREF1058_RS07645 - 30S ribosomal protein S6, at 170,799 to 171,143
_RS07645
HMPREF1058_RS07640: HMPREF1058_RS07640 - 30S ribosomal protein S18, at 171,146 to 171,415
_RS07640
HMPREF1058_RS07635: HMPREF1058_RS07635 - 50S ribosomal protein L9, at 171,431 to 171,874
_RS07635
HMPREF1058_RS07630: HMPREF1058_RS07630 - hypothetical protein, at 171,944 to 172,636
_RS07630
HMPREF1058_RS07625: HMPREF1058_RS07625 - hypothetical protein, at 172,791 to 172,991
_RS07625
Position (kb) 171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 170.542 kb on + strand, within HMPREF1058_RS07650 at 170.554 kb on + strand at 171.430 kb on + strand at 171.486 kb on + strand, within HMPREF1058_RS07635 at 171.654 kb on + strand, within HMPREF1058_RS07635 at 171.806 kb on + strand, within HMPREF1058_RS07635 at 171.806 kb on + strand, within HMPREF1058_RS07635 at 171.807 kb on - strand, within HMPREF1058_RS07635 at 171.885 kb on + strand at 171.895 kb on + strand at 171.949 kb on - strand at 171.980 kb on + strand at 172.000 kb on + strand at 172.021 kb on + strand, within HMPREF1058_RS07630 at 172.056 kb on + strand, within HMPREF1058_RS07630 at 172.056 kb on + strand, within HMPREF1058_RS07630 at 172.056 kb on + strand, within HMPREF1058_RS07630 at 172.057 kb on - strand, within HMPREF1058_RS07630 at 172.147 kb on + strand, within HMPREF1058_RS07630 at 172.165 kb on + strand, within HMPREF1058_RS07630 at 172.165 kb on + strand, within HMPREF1058_RS07630 at 172.167 kb on + strand, within HMPREF1058_RS07630 at 172.167 kb on + strand, within HMPREF1058_RS07630 at 172.168 kb on - strand, within HMPREF1058_RS07630 at 172.168 kb on - strand, within HMPREF1058_RS07630 at 172.283 kb on + strand, within HMPREF1058_RS07630 at 172.349 kb on - strand, within HMPREF1058_RS07630 at 172.385 kb on + strand, within HMPREF1058_RS07630 at 172.415 kb on + strand, within HMPREF1058_RS07630 at 172.415 kb on + strand, within HMPREF1058_RS07630 at 172.441 kb on + strand, within HMPREF1058_RS07630 at 172.441 kb on + strand, within HMPREF1058_RS07630 at 172.489 kb on + strand, within HMPREF1058_RS07630 at 172.493 kb on + strand, within HMPREF1058_RS07630 at 172.546 kb on + strand, within HMPREF1058_RS07630 at 172.547 kb on - strand, within HMPREF1058_RS07630 at 172.547 kb on - strand, within HMPREF1058_RS07630 at 172.671 kb on + strand at 172.683 kb on - strand at 172.687 kb on + strand at 172.720 kb on + strand at 172.721 kb on - strand at 172.792 kb on + strand at 172.792 kb on + strand at 172.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 170,542 + HMPREF1058_RS07650 0.89 -3.3 170,554 + -0.1 171,430 + -0.0 171,486 + HMPREF1058_RS07635 0.12 -1.2 171,654 + HMPREF1058_RS07635 0.50 -1.8 171,806 + HMPREF1058_RS07635 0.84 +0.3 171,806 + HMPREF1058_RS07635 0.84 -2.7 171,807 - HMPREF1058_RS07635 0.85 +2.8 171,885 + -0.5 171,895 + -0.9 171,949 - +1.0 171,980 + +0.8 172,000 + -0.6 172,021 + HMPREF1058_RS07630 0.11 +3.0 172,056 + HMPREF1058_RS07630 0.16 -0.8 172,056 + HMPREF1058_RS07630 0.16 +0.1 172,056 + HMPREF1058_RS07630 0.16 -0.2 172,057 - HMPREF1058_RS07630 0.16 +0.4 172,147 + HMPREF1058_RS07630 0.29 +1.9 172,165 + HMPREF1058_RS07630 0.32 +0.5 172,165 + HMPREF1058_RS07630 0.32 +0.9 172,167 + HMPREF1058_RS07630 0.32 +1.7 172,167 + HMPREF1058_RS07630 0.32 +0.9 172,168 - HMPREF1058_RS07630 0.32 -0.6 172,168 - HMPREF1058_RS07630 0.32 -1.1 172,283 + HMPREF1058_RS07630 0.49 +0.6 172,349 - HMPREF1058_RS07630 0.58 +1.5 172,385 + HMPREF1058_RS07630 0.64 +0.7 172,415 + HMPREF1058_RS07630 0.68 -2.0 172,415 + HMPREF1058_RS07630 0.68 -0.4 172,441 + HMPREF1058_RS07630 0.72 -0.3 172,441 + HMPREF1058_RS07630 0.72 -2.4 172,489 + HMPREF1058_RS07630 0.79 -0.6 172,493 + HMPREF1058_RS07630 0.79 -2.9 172,546 + HMPREF1058_RS07630 0.87 +0.0 172,547 - HMPREF1058_RS07630 0.87 +0.0 172,547 - HMPREF1058_RS07630 0.87 -0.2 172,671 + -0.2 172,683 - +1.6 172,687 + -0.2 172,720 + -1.8 172,721 - -2.8 172,792 + -0.0 172,792 + -1.1 172,806 - +0.4
Or see this region's nucleotide sequence