Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07095 and HMPREF1058_RS07090 are separated by 29 nucleotides HMPREF1058_RS07090 and HMPREF1058_RS07085 are separated by 2 nucleotides HMPREF1058_RS07085 and HMPREF1058_RS07080 are separated by 77 nucleotides HMPREF1058_RS07080 and HMPREF1058_RS07075 are separated by 210 nucleotides HMPREF1058_RS07075 and HMPREF1058_RS07070 are separated by 125 nucleotides
HMPREF1058_RS07095: HMPREF1058_RS07095 - PD40 domain-containing protein, at 317,974 to 321,234
_RS07095
HMPREF1058_RS07090: HMPREF1058_RS07090 - hypothetical protein, at 321,264 to 321,530
_RS07090
HMPREF1058_RS07085: HMPREF1058_RS07085 - phage holin family protein, at 321,533 to 321,889
_RS07085
HMPREF1058_RS07080: HMPREF1058_RS07080 - YtxH domain-containing protein, at 321,967 to 322,164
_RS07080
HMPREF1058_RS07075: HMPREF1058_RS07075 - SPOR domain-containing protein, at 322,375 to 322,872
_RS07075
HMPREF1058_RS07070: HMPREF1058_RS07070 - PCMD domain-containing protein, at 322,998 to 323,957
_RS07070
Position (kb) 321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 320.974 kb on - strand at 321.057 kb on + strand at 321.081 kb on + strand at 321.111 kb on - strand at 321.182 kb on + strand at 321.183 kb on - strand at 321.221 kb on - strand at 321.258 kb on - strand at 321.260 kb on + strand at 321.265 kb on + strand at 321.287 kb on - strand at 321.351 kb on - strand, within HMPREF1058_RS07090 at 321.448 kb on - strand, within HMPREF1058_RS07090 at 321.661 kb on + strand, within HMPREF1058_RS07085 at 321.671 kb on + strand, within HMPREF1058_RS07085 at 321.671 kb on + strand, within HMPREF1058_RS07085 at 321.690 kb on + strand, within HMPREF1058_RS07085 at 321.700 kb on + strand, within HMPREF1058_RS07085 at 321.700 kb on + strand, within HMPREF1058_RS07085 at 321.711 kb on + strand, within HMPREF1058_RS07085 at 321.711 kb on + strand, within HMPREF1058_RS07085 at 321.712 kb on - strand, within HMPREF1058_RS07085 at 321.725 kb on - strand, within HMPREF1058_RS07085 at 321.735 kb on - strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.775 kb on + strand, within HMPREF1058_RS07085 at 321.792 kb on - strand, within HMPREF1058_RS07085 at 321.804 kb on - strand, within HMPREF1058_RS07085 at 321.804 kb on - strand, within HMPREF1058_RS07085 at 321.862 kb on + strand at 321.863 kb on - strand at 321.947 kb on + strand at 321.947 kb on + strand at 321.947 kb on + strand at 322.024 kb on + strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.025 kb on - strand, within HMPREF1058_RS07080 at 322.042 kb on - strand, within HMPREF1058_RS07080 at 322.046 kb on - strand, within HMPREF1058_RS07080 at 322.149 kb on + strand at 322.149 kb on + strand at 322.149 kb on + strand at 322.305 kb on + strand at 322.307 kb on + strand at 322.327 kb on + strand at 322.327 kb on + strand at 322.329 kb on + strand at 322.348 kb on + strand at 322.349 kb on - strand at 322.352 kb on - strand at 322.352 kb on - strand at 322.386 kb on - strand at 322.454 kb on - strand, within HMPREF1058_RS07075 at 322.465 kb on + strand, within HMPREF1058_RS07075 at 322.465 kb on + strand, within HMPREF1058_RS07075 at 322.626 kb on - strand, within HMPREF1058_RS07075 at 322.634 kb on - strand, within HMPREF1058_RS07075 at 322.635 kb on + strand, within HMPREF1058_RS07075 at 322.635 kb on + strand, within HMPREF1058_RS07075 at 322.636 kb on - strand, within HMPREF1058_RS07075 at 322.641 kb on - strand, within HMPREF1058_RS07075 at 322.643 kb on + strand, within HMPREF1058_RS07075 at 322.643 kb on + strand, within HMPREF1058_RS07075 at 322.651 kb on - strand, within HMPREF1058_RS07075 at 322.691 kb on - strand, within HMPREF1058_RS07075 at 322.709 kb on - strand, within HMPREF1058_RS07075 at 322.709 kb on - strand, within HMPREF1058_RS07075 at 322.728 kb on + strand, within HMPREF1058_RS07075 at 322.729 kb on - strand, within HMPREF1058_RS07075 at 322.743 kb on + strand, within HMPREF1058_RS07075 at 322.819 kb on + strand, within HMPREF1058_RS07075 at 322.853 kb on + strand at 322.856 kb on + strand at 322.856 kb on + strand at 322.857 kb on - strand at 322.857 kb on - strand at 322.858 kb on + strand at 322.860 kb on + strand at 322.861 kb on - strand at 322.861 kb on - strand at 322.861 kb on - strand at 322.865 kb on + strand at 322.865 kb on + strand at 322.866 kb on - strand at 322.867 kb on + strand at 322.871 kb on - strand at 322.904 kb on - strand at 322.906 kb on - strand at 322.910 kb on + strand at 322.959 kb on + strand at 323.005 kb on - strand at 323.005 kb on - strand at 323.008 kb on - strand at 323.041 kb on + strand at 323.042 kb on - strand at 323.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 320,974 - -0.4 321,057 + -2.5 321,081 + -2.6 321,111 - +0.6 321,182 + -2.2 321,183 - +0.2 321,221 - -1.2 321,258 - -0.2 321,260 + +0.2 321,265 + -1.7 321,287 - -1.3 321,351 - HMPREF1058_RS07090 0.33 -2.3 321,448 - HMPREF1058_RS07090 0.69 -2.1 321,661 + HMPREF1058_RS07085 0.36 -1.1 321,671 + HMPREF1058_RS07085 0.39 +0.6 321,671 + HMPREF1058_RS07085 0.39 -1.0 321,690 + HMPREF1058_RS07085 0.44 -1.9 321,700 + HMPREF1058_RS07085 0.47 -0.4 321,700 + HMPREF1058_RS07085 0.47 -1.7 321,711 + HMPREF1058_RS07085 0.50 -0.0 321,711 + HMPREF1058_RS07085 0.50 -3.4 321,712 - HMPREF1058_RS07085 0.50 -0.2 321,725 - HMPREF1058_RS07085 0.54 -0.2 321,735 - HMPREF1058_RS07085 0.57 -0.9 321,775 + HMPREF1058_RS07085 0.68 +0.8 321,775 + HMPREF1058_RS07085 0.68 -0.4 321,775 + HMPREF1058_RS07085 0.68 -0.7 321,792 - HMPREF1058_RS07085 0.73 +4.1 321,804 - HMPREF1058_RS07085 0.76 -1.3 321,804 - HMPREF1058_RS07085 0.76 +0.0 321,862 + +0.2 321,863 - +1.8 321,947 + -0.9 321,947 + +2.8 321,947 + -0.2 322,024 + HMPREF1058_RS07080 0.29 -3.0 322,025 - HMPREF1058_RS07080 0.29 -2.0 322,025 - HMPREF1058_RS07080 0.29 +1.4 322,042 - HMPREF1058_RS07080 0.38 -0.9 322,046 - HMPREF1058_RS07080 0.40 -1.4 322,149 + +0.4 322,149 + -0.2 322,149 + +0.4 322,305 + +0.1 322,307 + -1.9 322,327 + -0.4 322,327 + +0.2 322,329 + -0.3 322,348 + -3.6 322,349 - -0.2 322,352 - +0.4 322,352 - +1.8 322,386 - -0.9 322,454 - HMPREF1058_RS07075 0.16 -2.9 322,465 + HMPREF1058_RS07075 0.18 +1.0 322,465 + HMPREF1058_RS07075 0.18 +1.5 322,626 - HMPREF1058_RS07075 0.50 +0.4 322,634 - HMPREF1058_RS07075 0.52 -2.2 322,635 + HMPREF1058_RS07075 0.52 -1.9 322,635 + HMPREF1058_RS07075 0.52 +2.7 322,636 - HMPREF1058_RS07075 0.52 -1.6 322,641 - HMPREF1058_RS07075 0.53 +4.4 322,643 + HMPREF1058_RS07075 0.54 +0.1 322,643 + HMPREF1058_RS07075 0.54 -1.0 322,651 - HMPREF1058_RS07075 0.55 -0.4 322,691 - HMPREF1058_RS07075 0.63 +0.2 322,709 - HMPREF1058_RS07075 0.67 -0.4 322,709 - HMPREF1058_RS07075 0.67 +1.2 322,728 + HMPREF1058_RS07075 0.71 -1.6 322,729 - HMPREF1058_RS07075 0.71 +1.0 322,743 + HMPREF1058_RS07075 0.74 +0.3 322,819 + HMPREF1058_RS07075 0.89 +1.9 322,853 + +0.2 322,856 + -0.0 322,856 + -1.0 322,857 - -0.9 322,857 - -1.8 322,858 + -0.8 322,860 + +0.3 322,861 - -0.1 322,861 - +0.6 322,861 - +0.6 322,865 + -0.2 322,865 + +1.8 322,866 - +0.6 322,867 + -0.9 322,871 - -0.6 322,904 - -2.1 322,906 - +0.9 322,910 + +1.3 322,959 + +0.8 323,005 - -2.0 323,005 - +1.1 323,008 - -2.6 323,041 + -1.6 323,042 - -1.1 323,052 + +0.9
Or see this region's nucleotide sequence