Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06915 and HMPREF1058_RS06910 are separated by 46 nucleotides
HMPREF1058_RS06915: HMPREF1058_RS06915 - diaminopimelate epimerase, at 362,174 to 363,016
_RS06915
HMPREF1058_RS06910: HMPREF1058_RS06910 - LL-diaminopimelate aminotransferase, at 363,063 to 364,292
_RS06910
Position (kb) 362
363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 361.263 kb on + strand at 361.533 kb on - strand at 361.533 kb on - strand at 361.758 kb on - strand at 361.762 kb on - strand at 361.795 kb on + strand at 361.933 kb on + strand at 361.933 kb on + strand at 361.964 kb on - strand at 362.222 kb on + strand at 362.224 kb on + strand at 362.228 kb on + strand at 362.228 kb on + strand at 362.228 kb on + strand at 362.229 kb on - strand at 362.233 kb on - strand at 362.233 kb on - strand at 362.236 kb on + strand at 362.297 kb on - strand, within HMPREF1058_RS06915 at 362.431 kb on - strand, within HMPREF1058_RS06915 at 362.431 kb on - strand, within HMPREF1058_RS06915 at 362.538 kb on + strand, within HMPREF1058_RS06915 at 362.538 kb on + strand, within HMPREF1058_RS06915 at 362.538 kb on + strand, within HMPREF1058_RS06915 at 362.539 kb on - strand, within HMPREF1058_RS06915 at 362.543 kb on - strand, within HMPREF1058_RS06915 at 362.577 kb on + strand, within HMPREF1058_RS06915 at 362.578 kb on - strand, within HMPREF1058_RS06915 at 362.691 kb on + strand, within HMPREF1058_RS06915 at 362.692 kb on - strand, within HMPREF1058_RS06915 at 362.888 kb on - strand, within HMPREF1058_RS06915 at 362.964 kb on + strand at 362.965 kb on - strand at 362.966 kb on + strand at 362.967 kb on - strand at 363.018 kb on - strand at 363.194 kb on - strand, within HMPREF1058_RS06910 at 363.194 kb on - strand, within HMPREF1058_RS06910 at 363.234 kb on - strand, within HMPREF1058_RS06910 at 363.295 kb on - strand, within HMPREF1058_RS06910 at 363.308 kb on - strand, within HMPREF1058_RS06910 at 363.465 kb on + strand, within HMPREF1058_RS06910 at 363.465 kb on + strand, within HMPREF1058_RS06910 at 363.466 kb on - strand, within HMPREF1058_RS06910 at 363.466 kb on - strand, within HMPREF1058_RS06910 at 363.466 kb on - strand, within HMPREF1058_RS06910 at 363.532 kb on + strand, within HMPREF1058_RS06910 at 363.589 kb on + strand, within HMPREF1058_RS06910 at 363.598 kb on + strand, within HMPREF1058_RS06910 at 363.599 kb on - strand, within HMPREF1058_RS06910 at 363.618 kb on - strand, within HMPREF1058_RS06910 at 363.669 kb on + strand, within HMPREF1058_RS06910 at 363.669 kb on + strand, within HMPREF1058_RS06910 at 363.670 kb on - strand, within HMPREF1058_RS06910 at 363.699 kb on + strand, within HMPREF1058_RS06910 at 363.725 kb on - strand, within HMPREF1058_RS06910 at 363.725 kb on - strand, within HMPREF1058_RS06910 at 363.754 kb on - strand, within HMPREF1058_RS06910 at 363.945 kb on + strand, within HMPREF1058_RS06910 at 363.945 kb on + strand, within HMPREF1058_RS06910 at 363.946 kb on - strand, within HMPREF1058_RS06910 at 363.976 kb on - strand, within HMPREF1058_RS06910
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 361,263 + -1.5 361,533 - -2.4 361,533 - -2.5 361,758 - +1.2 361,762 - +0.8 361,795 + -2.0 361,933 + -1.5 361,933 + +0.8 361,964 - -0.7 362,222 + +2.0 362,224 + +3.1 362,228 + -2.2 362,228 + -1.2 362,228 + +2.3 362,229 - -1.3 362,233 - +0.4 362,233 - -3.1 362,236 + +0.0 362,297 - HMPREF1058_RS06915 0.15 -0.6 362,431 - HMPREF1058_RS06915 0.30 -2.4 362,431 - HMPREF1058_RS06915 0.30 -2.1 362,538 + HMPREF1058_RS06915 0.43 -2.3 362,538 + HMPREF1058_RS06915 0.43 -0.2 362,538 + HMPREF1058_RS06915 0.43 -1.1 362,539 - HMPREF1058_RS06915 0.43 +1.6 362,543 - HMPREF1058_RS06915 0.44 -1.1 362,577 + HMPREF1058_RS06915 0.48 -1.5 362,578 - HMPREF1058_RS06915 0.48 -1.9 362,691 + HMPREF1058_RS06915 0.61 -2.7 362,692 - HMPREF1058_RS06915 0.61 -0.2 362,888 - HMPREF1058_RS06915 0.85 -1.8 362,964 + -1.6 362,965 - -0.4 362,966 + -0.2 362,967 - -1.3 363,018 - +1.5 363,194 - HMPREF1058_RS06910 0.11 +0.0 363,194 - HMPREF1058_RS06910 0.11 -0.2 363,234 - HMPREF1058_RS06910 0.14 +0.8 363,295 - HMPREF1058_RS06910 0.19 -1.5 363,308 - HMPREF1058_RS06910 0.20 -2.0 363,465 + HMPREF1058_RS06910 0.33 -0.5 363,465 + HMPREF1058_RS06910 0.33 +1.5 363,466 - HMPREF1058_RS06910 0.33 -1.4 363,466 - HMPREF1058_RS06910 0.33 -1.6 363,466 - HMPREF1058_RS06910 0.33 +0.8 363,532 + HMPREF1058_RS06910 0.38 +0.8 363,589 + HMPREF1058_RS06910 0.43 -1.4 363,598 + HMPREF1058_RS06910 0.43 -0.9 363,599 - HMPREF1058_RS06910 0.44 -0.8 363,618 - HMPREF1058_RS06910 0.45 +2.1 363,669 + HMPREF1058_RS06910 0.49 -0.9 363,669 + HMPREF1058_RS06910 0.49 -1.6 363,670 - HMPREF1058_RS06910 0.49 +0.7 363,699 + HMPREF1058_RS06910 0.52 -2.9 363,725 - HMPREF1058_RS06910 0.54 -2.1 363,725 - HMPREF1058_RS06910 0.54 +1.8 363,754 - HMPREF1058_RS06910 0.56 -1.6 363,945 + HMPREF1058_RS06910 0.72 -1.5 363,945 + HMPREF1058_RS06910 0.72 -1.3 363,946 - HMPREF1058_RS06910 0.72 +0.3 363,976 - HMPREF1058_RS06910 0.74 +0.3
Or see this region's nucleotide sequence