Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119800 and HMPREF1058_RS06470 are separated by 388 nucleotides HMPREF1058_RS06470 and HMPREF1058_RS20890 are separated by 170 nucleotides HMPREF1058_RS20890 and HMPREF1058_RS21475 overlap by 1 nucleotides HMPREF1058_RS21475 and HMPREF1058_RS06460 are separated by 211 nucleotides
HMPREF1058_RS0119800: HMPREF1058_RS0119800 - toprim domain-containing protein, at 470,766 to 472,289
_RS0119800
HMPREF1058_RS06470: HMPREF1058_RS06470 - hypothetical protein, at 472,678 to 472,992
_RS06470
HMPREF1058_RS20890: HMPREF1058_RS20890 - N-acetylmuramoyl-L-alanine amidase, at 473,163 to 473,579
_RS20890
HMPREF1058_RS21475: HMPREF1058_RS21475 - smalltalk protein, at 473,579 to 473,683
_RS21475
HMPREF1058_RS06460: HMPREF1058_RS06460 - hypothetical protein, at 473,895 to 474,383
_RS06460
Position (kb) 472
473 Strain fitness (log2 ratio) -2
-1
0
1
2 at 471.867 kb on + strand, within HMPREF1058_RS0119800 at 471.868 kb on - strand, within HMPREF1058_RS0119800 at 471.868 kb on - strand, within HMPREF1058_RS0119800 at 472.099 kb on + strand, within HMPREF1058_RS0119800 at 472.196 kb on + strand at 472.275 kb on - strand at 472.372 kb on + strand at 472.381 kb on + strand at 472.382 kb on - strand at 472.385 kb on + strand at 472.386 kb on - strand at 472.387 kb on + strand at 472.394 kb on + strand at 472.406 kb on - strand at 472.431 kb on - strand at 472.526 kb on + strand at 472.526 kb on + strand at 472.777 kb on - strand, within HMPREF1058_RS06470 at 472.846 kb on + strand, within HMPREF1058_RS06470 at 472.847 kb on - strand, within HMPREF1058_RS06470 at 472.847 kb on - strand, within HMPREF1058_RS06470 at 472.946 kb on + strand, within HMPREF1058_RS06470 at 472.986 kb on - strand at 473.019 kb on - strand at 473.063 kb on + strand at 473.063 kb on + strand at 473.089 kb on - strand at 473.236 kb on - strand, within HMPREF1058_RS20890 at 473.286 kb on - strand, within HMPREF1058_RS20890 at 473.446 kb on + strand, within HMPREF1058_RS20890 at 473.447 kb on - strand, within HMPREF1058_RS20890 at 473.459 kb on + strand, within HMPREF1058_RS20890 at 473.460 kb on + strand, within HMPREF1058_RS20890 at 473.460 kb on + strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.584 kb on + strand at 473.584 kb on + strand at 473.584 kb on + strand at 473.637 kb on - strand, within HMPREF1058_RS21475 at 473.711 kb on - strand at 473.722 kb on - strand at 473.830 kb on + strand at 473.882 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 471,867 + HMPREF1058_RS0119800 0.72 +0.7 471,868 - HMPREF1058_RS0119800 0.72 -0.1 471,868 - HMPREF1058_RS0119800 0.72 -2.1 472,099 + HMPREF1058_RS0119800 0.87 +2.7 472,196 + +0.6 472,275 - -0.9 472,372 + +0.8 472,381 + -0.1 472,382 - -0.5 472,385 + -1.4 472,386 - -1.7 472,387 + +0.3 472,394 + -1.3 472,406 - +0.0 472,431 - +0.2 472,526 + -2.1 472,526 + -0.2 472,777 - HMPREF1058_RS06470 0.31 -0.9 472,846 + HMPREF1058_RS06470 0.53 -1.6 472,847 - HMPREF1058_RS06470 0.54 -1.7 472,847 - HMPREF1058_RS06470 0.54 +0.8 472,946 + HMPREF1058_RS06470 0.85 -1.9 472,986 - -2.1 473,019 - -0.0 473,063 + -1.3 473,063 + -0.9 473,089 - -1.9 473,236 - HMPREF1058_RS20890 0.18 +0.8 473,286 - HMPREF1058_RS20890 0.29 +0.5 473,446 + HMPREF1058_RS20890 0.68 -0.0 473,447 - HMPREF1058_RS20890 0.68 +0.0 473,459 + HMPREF1058_RS20890 0.71 -1.2 473,460 + HMPREF1058_RS20890 0.71 +1.5 473,460 + HMPREF1058_RS20890 0.71 +0.9 473,461 - HMPREF1058_RS20890 0.71 -1.1 473,461 - HMPREF1058_RS20890 0.71 +0.6 473,461 - HMPREF1058_RS20890 0.71 -1.1 473,461 - HMPREF1058_RS20890 0.71 +0.5 473,461 - HMPREF1058_RS20890 0.71 -2.2 473,584 + +1.0 473,584 + -2.5 473,584 + +0.2 473,637 - HMPREF1058_RS21475 0.55 +0.1 473,711 - -1.9 473,722 - -0.7 473,830 + +0.9 473,882 + -1.5
Or see this region's nucleotide sequence