Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06470 and HMPREF1058_RS20890 are separated by 170 nucleotides HMPREF1058_RS20890 and HMPREF1058_RS21475 overlap by 1 nucleotides HMPREF1058_RS21475 and HMPREF1058_RS06460 are separated by 211 nucleotides HMPREF1058_RS06460 and HMPREF1058_RS06455 are separated by 351 nucleotides HMPREF1058_RS06455 and HMPREF1058_RS06450 are separated by 223 nucleotides
HMPREF1058_RS06470: HMPREF1058_RS06470 - hypothetical protein, at 472,678 to 472,992
_RS06470
HMPREF1058_RS20890: HMPREF1058_RS20890 - N-acetylmuramoyl-L-alanine amidase, at 473,163 to 473,579
_RS20890
HMPREF1058_RS21475: HMPREF1058_RS21475 - smalltalk protein, at 473,579 to 473,683
_RS21475
HMPREF1058_RS06460: HMPREF1058_RS06460 - hypothetical protein, at 473,895 to 474,383
_RS06460
HMPREF1058_RS06455: HMPREF1058_RS06455 - DUF4248 domain-containing protein, at 474,735 to 474,953
_RS06455
HMPREF1058_RS06450: HMPREF1058_RS06450 - hypothetical protein, at 475,177 to 476,253
_RS06450
Position (kb) 473
474
475 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 472.946 kb on + strand, within HMPREF1058_RS06470 at 472.986 kb on - strand at 473.019 kb on - strand at 473.063 kb on + strand at 473.063 kb on + strand at 473.089 kb on - strand at 473.236 kb on - strand, within HMPREF1058_RS20890 at 473.286 kb on - strand, within HMPREF1058_RS20890 at 473.446 kb on + strand, within HMPREF1058_RS20890 at 473.447 kb on - strand, within HMPREF1058_RS20890 at 473.459 kb on + strand, within HMPREF1058_RS20890 at 473.460 kb on + strand, within HMPREF1058_RS20890 at 473.460 kb on + strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.461 kb on - strand, within HMPREF1058_RS20890 at 473.584 kb on + strand at 473.584 kb on + strand at 473.584 kb on + strand at 473.637 kb on - strand, within HMPREF1058_RS21475 at 473.711 kb on - strand at 473.722 kb on - strand at 473.830 kb on + strand at 473.882 kb on + strand at 474.097 kb on + strand, within HMPREF1058_RS06460 at 474.122 kb on + strand, within HMPREF1058_RS06460 at 474.122 kb on + strand, within HMPREF1058_RS06460 at 474.123 kb on - strand, within HMPREF1058_RS06460 at 474.123 kb on - strand, within HMPREF1058_RS06460 at 474.373 kb on + strand at 474.373 kb on + strand at 474.374 kb on - strand at 474.512 kb on - strand at 474.547 kb on + strand at 474.592 kb on + strand at 474.726 kb on - strand at 474.751 kb on + strand at 474.787 kb on - strand, within HMPREF1058_RS06455 at 474.903 kb on + strand, within HMPREF1058_RS06455 at 474.903 kb on + strand, within HMPREF1058_RS06455 at 474.904 kb on - strand, within HMPREF1058_RS06455 at 474.904 kb on - strand, within HMPREF1058_RS06455 at 475.074 kb on + strand at 475.075 kb on - strand at 475.076 kb on + strand at 475.116 kb on - strand at 475.117 kb on + strand at 475.118 kb on - strand at 475.186 kb on + strand at 475.352 kb on + strand, within HMPREF1058_RS06450 at 475.352 kb on + strand, within HMPREF1058_RS06450 at 475.353 kb on - strand, within HMPREF1058_RS06450 at 475.354 kb on + strand, within HMPREF1058_RS06450
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 472,946 + HMPREF1058_RS06470 0.85 -1.9 472,986 - -2.1 473,019 - -0.0 473,063 + -1.3 473,063 + -0.9 473,089 - -1.9 473,236 - HMPREF1058_RS20890 0.18 +0.8 473,286 - HMPREF1058_RS20890 0.29 +0.5 473,446 + HMPREF1058_RS20890 0.68 -0.0 473,447 - HMPREF1058_RS20890 0.68 +0.0 473,459 + HMPREF1058_RS20890 0.71 -1.2 473,460 + HMPREF1058_RS20890 0.71 +1.5 473,460 + HMPREF1058_RS20890 0.71 +0.9 473,461 - HMPREF1058_RS20890 0.71 -1.1 473,461 - HMPREF1058_RS20890 0.71 +0.6 473,461 - HMPREF1058_RS20890 0.71 -1.1 473,461 - HMPREF1058_RS20890 0.71 +0.5 473,461 - HMPREF1058_RS20890 0.71 -2.2 473,584 + +1.0 473,584 + -2.5 473,584 + +0.2 473,637 - HMPREF1058_RS21475 0.55 +0.1 473,711 - -1.9 473,722 - -0.7 473,830 + +0.9 473,882 + -1.5 474,097 + HMPREF1058_RS06460 0.41 -0.7 474,122 + HMPREF1058_RS06460 0.46 -2.7 474,122 + HMPREF1058_RS06460 0.46 -0.8 474,123 - HMPREF1058_RS06460 0.47 -1.3 474,123 - HMPREF1058_RS06460 0.47 -0.1 474,373 + +0.7 474,373 + -2.3 474,374 - -1.8 474,512 - +1.8 474,547 + -0.7 474,592 + -1.8 474,726 - -0.0 474,751 + -0.2 474,787 - HMPREF1058_RS06455 0.24 -0.4 474,903 + HMPREF1058_RS06455 0.77 -0.8 474,903 + HMPREF1058_RS06455 0.77 +0.8 474,904 - HMPREF1058_RS06455 0.77 -0.4 474,904 - HMPREF1058_RS06455 0.77 -0.7 475,074 + -1.6 475,075 - +0.1 475,076 + -0.7 475,116 - +0.9 475,117 + -2.4 475,118 - -0.0 475,186 + -1.3 475,352 + HMPREF1058_RS06450 0.16 +0.9 475,352 + HMPREF1058_RS06450 0.16 +0.8 475,353 - HMPREF1058_RS06450 0.16 -0.8 475,354 + HMPREF1058_RS06450 0.16 +2.8
Or see this region's nucleotide sequence