Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119805 and HMPREF1058_RS06215 overlap by 11 nucleotides HMPREF1058_RS06215 and HMPREF1058_RS06210 are separated by 556 nucleotides HMPREF1058_RS06210 and HMPREF1058_RS06205 are separated by 48 nucleotides
HMPREF1058_RS0119805: HMPREF1058_RS0119805 - lysine exporter LysO family protein, at 533,885 to 534,505
_RS0119805
HMPREF1058_RS06215: HMPREF1058_RS06215 - LysO family transporter, at 534,495 to 534,782
_RS06215
HMPREF1058_RS06210: HMPREF1058_RS06210 - antibiotic biosynthesis monooxygenase, at 535,339 to 535,614
_RS06210
HMPREF1058_RS06205: HMPREF1058_RS06205 - glycosyltransferase, at 535,663 to 536,820
_RS06205
Position (kb) 535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 534.396 kb on - strand, within HMPREF1058_RS0119805 at 534.399 kb on + strand, within HMPREF1058_RS0119805 at 534.399 kb on + strand, within HMPREF1058_RS0119805 at 534.399 kb on + strand, within HMPREF1058_RS0119805 at 534.400 kb on - strand, within HMPREF1058_RS0119805 at 534.400 kb on - strand, within HMPREF1058_RS0119805 at 534.400 kb on - strand, within HMPREF1058_RS0119805 at 534.400 kb on - strand, within HMPREF1058_RS0119805 at 534.401 kb on + strand, within HMPREF1058_RS0119805 at 534.401 kb on + strand, within HMPREF1058_RS0119805 at 534.401 kb on + strand, within HMPREF1058_RS0119805 at 534.404 kb on + strand, within HMPREF1058_RS0119805 at 534.404 kb on + strand, within HMPREF1058_RS0119805 at 534.404 kb on + strand, within HMPREF1058_RS0119805 at 534.405 kb on - strand, within HMPREF1058_RS0119805 at 534.405 kb on - strand, within HMPREF1058_RS0119805 at 534.405 kb on - strand, within HMPREF1058_RS0119805 at 534.408 kb on + strand, within HMPREF1058_RS0119805 at 534.408 kb on + strand, within HMPREF1058_RS0119805 at 534.408 kb on + strand, within HMPREF1058_RS0119805 at 534.408 kb on + strand, within HMPREF1058_RS0119805 at 534.409 kb on - strand, within HMPREF1058_RS0119805 at 534.409 kb on - strand, within HMPREF1058_RS0119805 at 534.409 kb on - strand, within HMPREF1058_RS0119805 at 534.410 kb on + strand, within HMPREF1058_RS0119805 at 534.488 kb on + strand at 534.539 kb on - strand, within HMPREF1058_RS06215 at 534.541 kb on - strand, within HMPREF1058_RS06215 at 534.570 kb on + strand, within HMPREF1058_RS06215 at 534.577 kb on - strand, within HMPREF1058_RS06215 at 534.627 kb on - strand, within HMPREF1058_RS06215 at 534.741 kb on + strand, within HMPREF1058_RS06215 at 534.741 kb on + strand, within HMPREF1058_RS06215 at 534.741 kb on + strand, within HMPREF1058_RS06215 at 534.741 kb on + strand, within HMPREF1058_RS06215 at 534.742 kb on - strand, within HMPREF1058_RS06215 at 534.742 kb on - strand, within HMPREF1058_RS06215 at 534.742 kb on - strand, within HMPREF1058_RS06215 at 534.742 kb on - strand, within HMPREF1058_RS06215 at 534.765 kb on - strand at 534.813 kb on - strand at 534.816 kb on - strand at 534.819 kb on + strand at 534.851 kb on + strand at 534.851 kb on + strand at 534.852 kb on - strand at 534.853 kb on + strand at 534.853 kb on + strand at 534.895 kb on + strand at 534.900 kb on - strand at 534.977 kb on + strand at 534.984 kb on - strand at 535.026 kb on - strand at 535.090 kb on + strand at 535.091 kb on - strand at 535.199 kb on - strand at 535.225 kb on + strand at 535.225 kb on + strand at 535.291 kb on + strand at 535.586 kb on - strand, within HMPREF1058_RS06210 at 535.586 kb on - strand, within HMPREF1058_RS06210 at 535.594 kb on - strand at 535.604 kb on - strand at 535.627 kb on + strand at 535.644 kb on - strand at 535.883 kb on - strand, within HMPREF1058_RS06205 at 535.894 kb on - strand, within HMPREF1058_RS06205 at 535.992 kb on - strand, within HMPREF1058_RS06205 at 535.996 kb on + strand, within HMPREF1058_RS06205 at 535.996 kb on + strand, within HMPREF1058_RS06205 at 535.996 kb on + strand, within HMPREF1058_RS06205 at 536.023 kb on - strand, within HMPREF1058_RS06205 at 536.025 kb on - strand, within HMPREF1058_RS06205 at 536.029 kb on - strand, within HMPREF1058_RS06205 at 536.187 kb on + strand, within HMPREF1058_RS06205 at 536.317 kb on + strand, within HMPREF1058_RS06205 at 536.493 kb on + strand, within HMPREF1058_RS06205 at 536.494 kb on - strand, within HMPREF1058_RS06205 at 536.511 kb on - strand, within HMPREF1058_RS06205
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 534,396 - HMPREF1058_RS0119805 0.82 +0.4 534,399 + HMPREF1058_RS0119805 0.83 -0.2 534,399 + HMPREF1058_RS0119805 0.83 +0.0 534,399 + HMPREF1058_RS0119805 0.83 +0.1 534,400 - HMPREF1058_RS0119805 0.83 -0.1 534,400 - HMPREF1058_RS0119805 0.83 +0.4 534,400 - HMPREF1058_RS0119805 0.83 +0.6 534,400 - HMPREF1058_RS0119805 0.83 +0.1 534,401 + HMPREF1058_RS0119805 0.83 +1.5 534,401 + HMPREF1058_RS0119805 0.83 -2.6 534,401 + HMPREF1058_RS0119805 0.83 -1.7 534,404 + HMPREF1058_RS0119805 0.84 -1.0 534,404 + HMPREF1058_RS0119805 0.84 -2.6 534,404 + HMPREF1058_RS0119805 0.84 -1.3 534,405 - HMPREF1058_RS0119805 0.84 +0.1 534,405 - HMPREF1058_RS0119805 0.84 -0.0 534,405 - HMPREF1058_RS0119805 0.84 -2.2 534,408 + HMPREF1058_RS0119805 0.84 -0.5 534,408 + HMPREF1058_RS0119805 0.84 -1.9 534,408 + HMPREF1058_RS0119805 0.84 -3.0 534,408 + HMPREF1058_RS0119805 0.84 -1.2 534,409 - HMPREF1058_RS0119805 0.84 -1.1 534,409 - HMPREF1058_RS0119805 0.84 +0.8 534,409 - HMPREF1058_RS0119805 0.84 -0.5 534,410 + HMPREF1058_RS0119805 0.85 -0.7 534,488 + -0.7 534,539 - HMPREF1058_RS06215 0.15 -1.2 534,541 - HMPREF1058_RS06215 0.16 -1.5 534,570 + HMPREF1058_RS06215 0.26 +1.8 534,577 - HMPREF1058_RS06215 0.28 -3.0 534,627 - HMPREF1058_RS06215 0.46 +0.7 534,741 + HMPREF1058_RS06215 0.85 +0.8 534,741 + HMPREF1058_RS06215 0.85 -1.8 534,741 + HMPREF1058_RS06215 0.85 +0.0 534,741 + HMPREF1058_RS06215 0.85 +0.2 534,742 - HMPREF1058_RS06215 0.86 -0.2 534,742 - HMPREF1058_RS06215 0.86 +0.2 534,742 - HMPREF1058_RS06215 0.86 +1.2 534,742 - HMPREF1058_RS06215 0.86 -0.2 534,765 - -0.3 534,813 - -1.4 534,816 - +2.6 534,819 + -1.0 534,851 + -0.9 534,851 + -3.3 534,852 - +0.1 534,853 + -0.3 534,853 + -3.5 534,895 + -0.0 534,900 - -0.7 534,977 + -1.3 534,984 - +2.2 535,026 - -2.7 535,090 + +0.2 535,091 - -0.4 535,199 - +0.0 535,225 + +1.7 535,225 + +0.1 535,291 + +0.7 535,586 - HMPREF1058_RS06210 0.89 -1.4 535,586 - HMPREF1058_RS06210 0.89 -1.1 535,594 - -1.2 535,604 - -1.6 535,627 + -0.2 535,644 - +1.2 535,883 - HMPREF1058_RS06205 0.19 +0.7 535,894 - HMPREF1058_RS06205 0.20 +0.2 535,992 - HMPREF1058_RS06205 0.28 -0.9 535,996 + HMPREF1058_RS06205 0.29 -0.6 535,996 + HMPREF1058_RS06205 0.29 -0.2 535,996 + HMPREF1058_RS06205 0.29 +0.8 536,023 - HMPREF1058_RS06205 0.31 -1.4 536,025 - HMPREF1058_RS06205 0.31 +0.1 536,029 - HMPREF1058_RS06205 0.32 -3.1 536,187 + HMPREF1058_RS06205 0.45 +1.4 536,317 + HMPREF1058_RS06205 0.56 +0.3 536,493 + HMPREF1058_RS06205 0.72 +1.9 536,494 - HMPREF1058_RS06205 0.72 -2.1 536,511 - HMPREF1058_RS06205 0.73 +1.7
Or see this region's nucleotide sequence