Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05930

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
45,961	+		HMPREF1058_RS05940	0.67	+1.1
46,047	-		HMPREF1058_RS05940	0.80	-0.1
46,085	+		HMPREF1058_RS05940	0.85	+2.2
46,164	-				+0.4
46,164	-				+0.5
46,189	+				-1.1
46,189	+				+0.8
46,189	+				-0.2
46,189	+				-2.8
46,189	+				-2.6
46,190	-				+1.3
46,212	+				+1.4
46,212	+				+3.1
46,213	-				-1.7
46,224	+				-1.8
46,224	+				-1.9
46,225	-				-1.8
46,225	-				-2.5
46,350	+		HMPREF1058_RS05935	0.23	-0.6
46,351	-		HMPREF1058_RS05935	0.23	-0.3
46,351	-		HMPREF1058_RS05935	0.23	-0.7
46,419	-		HMPREF1058_RS05935	0.35	-2.0
46,420	+		HMPREF1058_RS05935	0.36	-1.3
46,421	-		HMPREF1058_RS05935	0.36	-2.9
46,476	+		HMPREF1058_RS05935	0.46	+0.3
46,482	-		HMPREF1058_RS05935	0.47	+0.3
46,514	-		HMPREF1058_RS05935	0.52	-2.5
46,514	-		HMPREF1058_RS05935	0.52	+0.2
46,542	-		HMPREF1058_RS05935	0.57	+0.4
46,542	-		HMPREF1058_RS05935	0.57	-1.4
46,543	+		HMPREF1058_RS05935	0.57	+0.5
46,544	-		HMPREF1058_RS05935	0.57	-2.7
46,545	+		HMPREF1058_RS05935	0.58	+1.6
46,546	-		HMPREF1058_RS05935	0.58	-0.9
46,551	+		HMPREF1058_RS05935	0.59	+1.0
46,552	-		HMPREF1058_RS05935	0.59	-1.0
46,625	+		HMPREF1058_RS05935	0.72	+0.5
46,628	-		HMPREF1058_RS05935	0.72	+0.0
46,646	+		HMPREF1058_RS05935	0.75	+0.4
46,650	-		HMPREF1058_RS05935	0.76	-2.2
46,676	+		HMPREF1058_RS05935	0.81	-0.3
46,677	-		HMPREF1058_RS05935	0.81	+0.2
46,724	-		HMPREF1058_RS05935	0.89	-0.3
46,754	+				-0.2
46,755	-				-2.0
46,774	-				-1.4
46,774	-				-0.4
46,785	-				+0.9
46,789	+				-0.7
46,841	+				-2.2
46,867	-				+0.8
46,868	+				+0.4
46,868	+				+0.9
46,868	+				+0.7
47,077	+		HMPREF1058_RS05930	0.18	-1.4
47,141	+		HMPREF1058_RS05930	0.23	-1.8
47,241	+		HMPREF1058_RS05930	0.31	-2.3
47,242	-		HMPREF1058_RS05930	0.31	-1.6
47,285	-		HMPREF1058_RS05930	0.35	-0.7
47,289	+		HMPREF1058_RS05930	0.35	-0.8
47,289	+		HMPREF1058_RS05930	0.35	+0.3
47,447	-		HMPREF1058_RS05930	0.47	-0.3
47,447	-		HMPREF1058_RS05930	0.47	-2.1
47,457	+		HMPREF1058_RS05930	0.48	-2.2
47,539	+		HMPREF1058_RS05930	0.54	-1.9
47,578	+		HMPREF1058_RS05930	0.58	-0.1
47,613	+		HMPREF1058_RS05930	0.60	-1.4
47,615	+		HMPREF1058_RS05930	0.60	-2.6
47,738	+		HMPREF1058_RS05930	0.70	-3.1
47,774	+		HMPREF1058_RS05930	0.73	-0.2
47,775	-		HMPREF1058_RS05930	0.73	-1.3
47,782	+		HMPREF1058_RS05930	0.73	-2.5
47,840	+		HMPREF1058_RS05930	0.78	-0.7
47,841	-		HMPREF1058_RS05930	0.78	-0.3
47,841	-		HMPREF1058_RS05930	0.78	+0.3
47,899	+		HMPREF1058_RS05930	0.83	+0.3
47,932	-		HMPREF1058_RS05930	0.85	-2.3
47,953	-		HMPREF1058_RS05930	0.87	-0.1
47,982	-		HMPREF1058_RS05930	0.89	+0.8
47,993	-				-1.8
47,993	-				-0.1
48,023	+				+0.3
48,024	-				-1.0
48,039	+				-1.2
48,131	+				-3.6
48,145	+				+2.0
48,150	+				-0.5
48,263	+				-0.3
48,273	-				+0.6
48,288	-				-0.8
48,291	-				-1.8
48,419	-		HMPREF1058_RS05925	0.16	+2.9
48,551	-		HMPREF1058_RS05925	0.37	+4.2
48,551	-		HMPREF1058_RS05925	0.37	+2.3
48,606	+		HMPREF1058_RS05925	0.46	+2.9
48,721	+		HMPREF1058_RS05925	0.65	+0.2