Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05650

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
110,152	+				-0.6
110,206	+				-0.9
110,275	-				-0.7
110,312	+				-1.3
110,410	+		HMPREF1058_RS05655	0.18	-0.2
110,420	-		HMPREF1058_RS05655	0.19	-0.6
110,432	+		HMPREF1058_RS05655	0.21	-3.7
110,472	+		HMPREF1058_RS05655	0.26	-0.7
110,554	-		HMPREF1058_RS05655	0.35	+1.9
110,667	+		HMPREF1058_RS05655	0.49	-1.2
110,667	+		HMPREF1058_RS05655	0.49	-0.7
110,668	-		HMPREF1058_RS05655	0.49	+1.4
110,703	+		HMPREF1058_RS05655	0.53	+1.8
110,704	-		HMPREF1058_RS05655	0.53	-0.7
110,720	+		HMPREF1058_RS05655	0.55	-0.7
110,722	+		HMPREF1058_RS05655	0.55	-0.8
110,722	+		HMPREF1058_RS05655	0.55	+0.1
110,722	+		HMPREF1058_RS05655	0.55	+0.6
110,723	-				+2.9
110,723	-		HMPREF1058_RS05655	0.55	+0.3
110,723	-		HMPREF1058_RS05655	0.55	-2.9
110,821	-		HMPREF1058_RS05655	0.67	+0.2
110,852	-		HMPREF1058_RS05655	0.71	-0.1
110,852	-		HMPREF1058_RS05655	0.71	-1.1
111,032	-				+0.9
111,046	-				-2.1
111,056	-				-0.6
111,145	+				+1.2
111,145	+				+2.2
111,145	+				+2.9
111,146	-				+1.2
111,147	+				+0.2
111,147	+				-0.4
111,147	+				+0.5
111,147	+				+2.8
111,148	-				+0.1
111,203	-		HMPREF1058_RS05650	0.12	-0.6
111,367	+		HMPREF1058_RS05650	0.38	-0.8
111,423	-		HMPREF1058_RS05650	0.47	-1.0
111,571	-				-0.1
111,632	-		HMPREF1058_RS05650	0.81	-2.5
111,638	-		HMPREF1058_RS05650	0.82	-2.2
111,709	-				-0.4
111,762	+				-1.9
111,848	+				-0.3
111,850	+				+0.2
111,851	-				+0.0
112,079	+		HMPREF1058_RS05645	0.31	+0.2
112,152	-		HMPREF1058_RS05645	0.39	-1.9
112,179	+		HMPREF1058_RS05645	0.42	-3.2
112,255	+		HMPREF1058_RS05645	0.49	+1.9
112,255	+		HMPREF1058_RS05645	0.49	-3.2
112,283	+		HMPREF1058_RS05645	0.52	-2.6
112,414	-		HMPREF1058_RS05645	0.66	-1.2
112,457	-		HMPREF1058_RS05645	0.70	-1.2
112,636	+		HMPREF1058_RS05645	0.89	+1.8
112,639	-		HMPREF1058_RS05645	0.89	-2.0
112,639	-		HMPREF1058_RS05645	0.89	-2.5
112,723	-				+1.4
112,725	+				-1.0
112,725	+				-0.3
112,728	-				-3.4