Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05645

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
110,821	-		HMPREF1058_RS05655	0.67	+0.2
110,852	-		HMPREF1058_RS05655	0.71	-0.1
110,852	-		HMPREF1058_RS05655	0.71	-1.1
111,032	-				+0.9
111,046	-				-2.1
111,056	-				-0.6
111,145	+				+1.2
111,145	+				+2.2
111,145	+				+2.9
111,146	-				+1.2
111,147	+				+0.2
111,147	+				-0.4
111,147	+				+0.5
111,147	+				+2.8
111,148	-				+0.1
111,203	-		HMPREF1058_RS05650	0.12	-0.6
111,367	+		HMPREF1058_RS05650	0.38	-0.8
111,423	-		HMPREF1058_RS05650	0.47	-1.0
111,571	-				-0.1
111,632	-		HMPREF1058_RS05650	0.81	-2.5
111,638	-		HMPREF1058_RS05650	0.82	-2.2
111,709	-				-0.4
111,762	+				-1.9
111,848	+				-0.3
111,850	+				+0.2
111,851	-				+0.0
112,079	+		HMPREF1058_RS05645	0.31	+0.2
112,152	-		HMPREF1058_RS05645	0.39	-1.9
112,179	+		HMPREF1058_RS05645	0.42	-3.2
112,255	+		HMPREF1058_RS05645	0.49	+1.9
112,255	+		HMPREF1058_RS05645	0.49	-3.2
112,283	+		HMPREF1058_RS05645	0.52	-2.6
112,414	-		HMPREF1058_RS05645	0.66	-1.2
112,457	-		HMPREF1058_RS05645	0.70	-1.2
112,636	+		HMPREF1058_RS05645	0.89	+1.8
112,639	-		HMPREF1058_RS05645	0.89	-2.0
112,639	-		HMPREF1058_RS05645	0.89	-2.5
112,723	-				+1.4
112,725	+				-1.0
112,725	+				-0.3
112,728	-				-3.4
112,765	-				-0.1
112,877	+				-1.3
113,042	-		HMPREF1058_RS05640	0.11	-1.0
113,104	+		HMPREF1058_RS05640	0.14	-0.4
113,104	+		HMPREF1058_RS05640	0.14	+0.8
113,105	-		HMPREF1058_RS05640	0.14	+2.7
113,145	+		HMPREF1058_RS05640	0.15	-1.4
113,243	+		HMPREF1058_RS05640	0.19	-2.8
113,255	+		HMPREF1058_RS05640	0.20	+1.1
113,260	+		HMPREF1058_RS05640	0.20	-0.4
113,260	+		HMPREF1058_RS05640	0.20	+0.6
113,362	+		HMPREF1058_RS05640	0.24	-0.8
113,374	-		HMPREF1058_RS05640	0.24	-2.3
113,376	+				+1.9
113,424	+		HMPREF1058_RS05640	0.26	+0.9
113,424	+		HMPREF1058_RS05640	0.26	-0.6
113,425	-		HMPREF1058_RS05640	0.26	-2.8
113,425	-		HMPREF1058_RS05640	0.26	-0.3
113,425	-		HMPREF1058_RS05640	0.26	+0.9
113,426	+		HMPREF1058_RS05640	0.26	-0.1
113,426	+		HMPREF1058_RS05640	0.26	-0.3
113,426	+		HMPREF1058_RS05640	0.26	+2.8
113,427	-		HMPREF1058_RS05640	0.26	-0.3
113,428	+		HMPREF1058_RS05640	0.26	+0.3
113,553	-				-0.6
113,553	-		HMPREF1058_RS05640	0.31	+1.3
113,621	+		HMPREF1058_RS05640	0.34	+1.0
113,621	+		HMPREF1058_RS05640	0.34	-3.2
113,622	-		HMPREF1058_RS05640	0.34	-0.1
113,651	+		HMPREF1058_RS05640	0.35	-0.8
113,652	-		HMPREF1058_RS05640	0.35	-0.8
113,731	-		HMPREF1058_RS05640	0.38	+0.3
113,732	+		HMPREF1058_RS05640	0.38	+0.7
113,733	-		HMPREF1058_RS05640	0.38	+1.7
113,733	-		HMPREF1058_RS05640	0.38	+1.1