Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05425 and HMPREF1058_RS05420 are separated by 13 nucleotides HMPREF1058_RS05420 and HMPREF1058_RS05415 are separated by 76 nucleotides HMPREF1058_RS05415 and HMPREF1058_RS05410 are separated by 101 nucleotides HMPREF1058_RS05410 and HMPREF1058_RS05405 are separated by 22 nucleotides
HMPREF1058_RS05425: HMPREF1058_RS05425 - class I fructose-bisphosphate aldolase, at 168,287 to 169,336
_RS05425
HMPREF1058_RS05420: HMPREF1058_RS05420 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 169,350 to 170,099
_RS05420
HMPREF1058_RS05415: HMPREF1058_RS05415 - Hsp20/alpha crystallin family protein, at 170,176 to 170,604
_RS05415
HMPREF1058_RS05410: HMPREF1058_RS05410 - RNA polymerase sigma factor, at 170,706 to 171,203
_RS05410
HMPREF1058_RS05405: HMPREF1058_RS05405 - 6-phosphofructokinase, at 171,226 to 172,212
_RS05405
Position (kb) 170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 169.207 kb on - strand, within HMPREF1058_RS05425 at 169.306 kb on - strand at 169.306 kb on - strand at 169.345 kb on + strand at 169.345 kb on + strand at 169.360 kb on + strand at 169.370 kb on - strand at 169.370 kb on - strand at 169.433 kb on - strand, within HMPREF1058_RS05420 at 169.510 kb on - strand, within HMPREF1058_RS05420 at 169.640 kb on + strand, within HMPREF1058_RS05420 at 169.678 kb on + strand, within HMPREF1058_RS05420 at 169.679 kb on - strand, within HMPREF1058_RS05420 at 169.699 kb on - strand, within HMPREF1058_RS05420 at 169.815 kb on - strand, within HMPREF1058_RS05420 at 169.867 kb on - strand, within HMPREF1058_RS05420 at 169.950 kb on - strand, within HMPREF1058_RS05420 at 169.984 kb on - strand, within HMPREF1058_RS05420 at 170.148 kb on + strand at 170.303 kb on - strand, within HMPREF1058_RS05415 at 170.303 kb on - strand, within HMPREF1058_RS05415 at 170.431 kb on + strand at 170.432 kb on - strand, within HMPREF1058_RS05415 at 170.432 kb on - strand, within HMPREF1058_RS05415 at 170.603 kb on - strand at 170.783 kb on + strand, within HMPREF1058_RS05410 at 170.946 kb on + strand, within HMPREF1058_RS05410 at 170.946 kb on + strand, within HMPREF1058_RS05410 at 170.946 kb on + strand at 170.947 kb on - strand, within HMPREF1058_RS05410 at 170.970 kb on + strand, within HMPREF1058_RS05410 at 170.971 kb on - strand, within HMPREF1058_RS05410 at 170.971 kb on - strand, within HMPREF1058_RS05410 at 171.018 kb on + strand, within HMPREF1058_RS05410 at 171.039 kb on - strand, within HMPREF1058_RS05410 at 171.087 kb on + strand, within HMPREF1058_RS05410 at 171.087 kb on + strand, within HMPREF1058_RS05410 at 171.087 kb on + strand, within HMPREF1058_RS05410 at 171.146 kb on + strand, within HMPREF1058_RS05410 at 171.189 kb on - strand at 171.241 kb on + strand at 171.242 kb on - strand at 171.243 kb on + strand at 171.405 kb on - strand, within HMPREF1058_RS05405 at 171.430 kb on - strand, within HMPREF1058_RS05405 at 171.532 kb on - strand at 171.597 kb on - strand, within HMPREF1058_RS05405
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 169,207 - HMPREF1058_RS05425 0.88 -2.4 169,306 - -0.5 169,306 - +0.9 169,345 + +0.5 169,345 + -1.1 169,360 + -0.6 169,370 - -0.9 169,370 - -0.4 169,433 - HMPREF1058_RS05420 0.11 +0.3 169,510 - HMPREF1058_RS05420 0.21 -0.7 169,640 + HMPREF1058_RS05420 0.39 +1.3 169,678 + HMPREF1058_RS05420 0.44 -0.4 169,679 - HMPREF1058_RS05420 0.44 +1.2 169,699 - HMPREF1058_RS05420 0.47 -0.0 169,815 - HMPREF1058_RS05420 0.62 +1.0 169,867 - HMPREF1058_RS05420 0.69 -1.2 169,950 - HMPREF1058_RS05420 0.80 -0.7 169,984 - HMPREF1058_RS05420 0.85 -0.0 170,148 + +1.6 170,303 - HMPREF1058_RS05415 0.30 -2.2 170,303 - HMPREF1058_RS05415 0.30 -1.7 170,431 + -0.4 170,432 - HMPREF1058_RS05415 0.60 +0.3 170,432 - HMPREF1058_RS05415 0.60 -1.7 170,603 - +1.1 170,783 + HMPREF1058_RS05410 0.15 +2.2 170,946 + HMPREF1058_RS05410 0.48 +1.5 170,946 + HMPREF1058_RS05410 0.48 -1.6 170,946 + +0.9 170,947 - HMPREF1058_RS05410 0.48 +1.3 170,970 + HMPREF1058_RS05410 0.53 -3.4 170,971 - HMPREF1058_RS05410 0.53 -1.2 170,971 - HMPREF1058_RS05410 0.53 -1.4 171,018 + HMPREF1058_RS05410 0.63 -1.1 171,039 - HMPREF1058_RS05410 0.67 -1.5 171,087 + HMPREF1058_RS05410 0.77 +0.7 171,087 + HMPREF1058_RS05410 0.77 +0.9 171,087 + HMPREF1058_RS05410 0.77 +3.7 171,146 + HMPREF1058_RS05410 0.88 +0.6 171,189 - -2.5 171,241 + +1.0 171,242 - +0.4 171,243 + +2.9 171,405 - HMPREF1058_RS05405 0.18 -1.2 171,430 - HMPREF1058_RS05405 0.21 -1.6 171,532 - +0.1 171,597 - HMPREF1058_RS05405 0.38 +0.3
Or see this region's nucleotide sequence