Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05085 and HMPREF1058_RS05080 are separated by 7 nucleotides HMPREF1058_RS05080 and HMPREF1058_RS05075 are separated by 12 nucleotides HMPREF1058_RS05075 and HMPREF1058_RS05070 are separated by 150 nucleotides HMPREF1058_RS05070 and HMPREF1058_RS05065 are separated by 22 nucleotides
HMPREF1058_RS05085: HMPREF1058_RS05085 - hypothetical protein, at 250,430 to 251,365
_RS05085
HMPREF1058_RS05080: HMPREF1058_RS05080 - hypothetical protein, at 251,373 to 252,323
_RS05080
HMPREF1058_RS05075: HMPREF1058_RS05075 - hypothetical protein, at 252,336 to 252,821
_RS05075
HMPREF1058_RS05070: HMPREF1058_RS05070 - hypothetical protein, at 252,972 to 253,466
_RS05070
HMPREF1058_RS05065: HMPREF1058_RS05065 - WG repeat-containing protein, at 253,489 to 255,183
_RS05065
Position (kb) 252
253 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 251.346 kb on - strand at 251.346 kb on - strand at 251.456 kb on - strand at 251.850 kb on - strand, within HMPREF1058_RS05080 at 251.855 kb on - strand, within HMPREF1058_RS05080 at 251.855 kb on - strand, within HMPREF1058_RS05080 at 251.878 kb on + strand, within HMPREF1058_RS05080 at 251.879 kb on - strand, within HMPREF1058_RS05080 at 251.879 kb on - strand, within HMPREF1058_RS05080 at 251.883 kb on - strand, within HMPREF1058_RS05080 at 251.907 kb on - strand, within HMPREF1058_RS05080 at 251.910 kb on - strand, within HMPREF1058_RS05080 at 251.945 kb on + strand, within HMPREF1058_RS05080 at 252.174 kb on - strand, within HMPREF1058_RS05080 at 252.283 kb on - strand at 252.300 kb on + strand at 252.305 kb on + strand at 252.306 kb on - strand at 252.310 kb on + strand at 252.471 kb on + strand, within HMPREF1058_RS05075 at 252.471 kb on + strand, within HMPREF1058_RS05075 at 252.472 kb on - strand, within HMPREF1058_RS05075 at 252.472 kb on - strand, within HMPREF1058_RS05075 at 252.476 kb on - strand, within HMPREF1058_RS05075 at 252.517 kb on + strand, within HMPREF1058_RS05075 at 252.642 kb on - strand, within HMPREF1058_RS05075 at 252.921 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.964 kb on + strand at 252.965 kb on - strand at 252.965 kb on - strand at 252.965 kb on - strand at 252.968 kb on + strand at 252.968 kb on + strand at 252.987 kb on + strand at 252.996 kb on - strand at 252.996 kb on - strand at 253.127 kb on - strand, within HMPREF1058_RS05070 at 253.127 kb on - strand, within HMPREF1058_RS05070 at 253.187 kb on + strand, within HMPREF1058_RS05070 at 253.248 kb on + strand, within HMPREF1058_RS05070 at 253.332 kb on - strand, within HMPREF1058_RS05070 at 253.345 kb on - strand, within HMPREF1058_RS05070 at 253.345 kb on - strand, within HMPREF1058_RS05070 at 253.427 kb on + strand at 253.427 kb on + strand at 253.436 kb on + strand at 253.483 kb on + strand at 253.484 kb on - strand at 253.485 kb on + strand at 253.486 kb on - strand at 253.488 kb on - strand at 253.551 kb on - strand at 253.603 kb on + strand at 253.604 kb on - strand at 253.604 kb on - strand at 253.610 kb on + strand at 253.632 kb on + strand at 253.647 kb on + strand at 253.648 kb on - strand at 253.654 kb on - strand at 253.654 kb on - strand at 253.678 kb on + strand, within HMPREF1058_RS05065 at 253.678 kb on + strand, within HMPREF1058_RS05065 at 253.747 kb on - strand, within HMPREF1058_RS05065 at 253.765 kb on - strand, within HMPREF1058_RS05065 at 253.796 kb on + strand, within HMPREF1058_RS05065
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 251,346 - -0.7 251,346 - -0.4 251,456 - +1.9 251,850 - HMPREF1058_RS05080 0.50 -0.4 251,855 - HMPREF1058_RS05080 0.51 +0.3 251,855 - HMPREF1058_RS05080 0.51 +0.1 251,878 + HMPREF1058_RS05080 0.53 -0.5 251,879 - HMPREF1058_RS05080 0.53 +0.9 251,879 - HMPREF1058_RS05080 0.53 -2.1 251,883 - HMPREF1058_RS05080 0.54 -0.3 251,907 - HMPREF1058_RS05080 0.56 +0.0 251,910 - HMPREF1058_RS05080 0.56 -1.0 251,945 + HMPREF1058_RS05080 0.60 +1.1 252,174 - HMPREF1058_RS05080 0.84 -2.5 252,283 - +0.3 252,300 + -0.9 252,305 + -1.8 252,306 - -0.3 252,310 + +2.0 252,471 + HMPREF1058_RS05075 0.28 -2.1 252,471 + HMPREF1058_RS05075 0.28 -1.4 252,472 - HMPREF1058_RS05075 0.28 -0.4 252,472 - HMPREF1058_RS05075 0.28 +2.9 252,476 - HMPREF1058_RS05075 0.29 +1.7 252,517 + HMPREF1058_RS05075 0.37 -1.6 252,642 - HMPREF1058_RS05075 0.63 -0.3 252,921 + +0.6 252,964 + +1.2 252,964 + -4.1 252,964 + +1.9 252,964 + -1.7 252,964 + -0.9 252,964 + +1.2 252,965 - -0.2 252,965 - +0.9 252,965 - +0.3 252,968 + +1.2 252,968 + -0.7 252,987 + +0.3 252,996 - +2.6 252,996 - +1.2 253,127 - HMPREF1058_RS05070 0.31 +0.1 253,127 - HMPREF1058_RS05070 0.31 +0.1 253,187 + HMPREF1058_RS05070 0.43 +0.2 253,248 + HMPREF1058_RS05070 0.56 -2.2 253,332 - HMPREF1058_RS05070 0.73 -1.0 253,345 - HMPREF1058_RS05070 0.75 +1.8 253,345 - HMPREF1058_RS05070 0.75 -0.8 253,427 + -1.3 253,427 + +2.4 253,436 + -1.4 253,483 + -0.3 253,484 - -0.5 253,485 + -0.6 253,486 - +0.9 253,488 - -1.4 253,551 - +0.3 253,603 + -1.6 253,604 - +0.9 253,604 - -2.7 253,610 + +0.3 253,632 + -1.4 253,647 + -1.1 253,648 - -2.3 253,654 - -3.0 253,654 - -0.6 253,678 + HMPREF1058_RS05065 0.11 -0.1 253,678 + HMPREF1058_RS05065 0.11 +1.9 253,747 - HMPREF1058_RS05065 0.15 -0.1 253,765 - HMPREF1058_RS05065 0.16 +0.6 253,796 + HMPREF1058_RS05065 0.18 +0.8
Or see this region's nucleotide sequence