Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04825

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS04830 and HMPREF1058_RS04825 are separated by 72 nucleotidesHMPREF1058_RS04825 and HMPREF1058_RS04820 are separated by 70 nucleotidesHMPREF1058_RS04820 and HMPREF1058_RS04815 are separated by 328 nucleotides HMPREF1058_RS04830: HMPREF1058_RS04830 - ankyrin repeat domain-containing protein, at 306,384 to 307,403 _RS04830 HMPREF1058_RS04825: HMPREF1058_RS04825 - hypothetical protein, at 307,476 to 308,228 _RS04825 HMPREF1058_RS04820: HMPREF1058_RS04820 - hypothetical protein, at 308,299 to 308,889 _RS04820 HMPREF1058_RS04815: HMPREF1058_RS04815 - hypothetical protein, at 309,218 to 310,216 _RS04815 Position (kb) 307 308 309Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 306.659 kb on - strand, within HMPREF1058_RS04830at 306.659 kb on - strand, within HMPREF1058_RS04830at 306.664 kb on + strand, within HMPREF1058_RS04830at 306.665 kb on - strand, within HMPREF1058_RS04830at 306.699 kb on - strand, within HMPREF1058_RS04830at 306.833 kb on + strand, within HMPREF1058_RS04830at 306.833 kb on + strand, within HMPREF1058_RS04830at 306.833 kb on + strand, within HMPREF1058_RS04830at 306.833 kb on + strand, within HMPREF1058_RS04830at 306.833 kb on + strand, within HMPREF1058_RS04830at 306.833 kb on + strand, within HMPREF1058_RS04830at 306.834 kb on - strand, within HMPREF1058_RS04830at 306.834 kb on - strand, within HMPREF1058_RS04830at 306.834 kb on - strand, within HMPREF1058_RS04830at 306.834 kb on - strand, within HMPREF1058_RS04830at 306.834 kb on - strand, within HMPREF1058_RS04830at 306.834 kb on - strand, within HMPREF1058_RS04830at 306.835 kb on + strand, within HMPREF1058_RS04830at 306.835 kb on + strand, within HMPREF1058_RS04830at 306.836 kb on - strand, within HMPREF1058_RS04830at 306.836 kb on - strand, within HMPREF1058_RS04830at 306.836 kb on - strand, within HMPREF1058_RS04830at 306.860 kb on + strand, within HMPREF1058_RS04830at 306.861 kb on - strand, within HMPREF1058_RS04830at 306.867 kb on + strand, within HMPREF1058_RS04830at 306.867 kb on + strand, within HMPREF1058_RS04830at 306.867 kb on + strand, within HMPREF1058_RS04830at 306.868 kb on - strand, within HMPREF1058_RS04830at 306.941 kb on - strand, within HMPREF1058_RS04830at 306.977 kb on + strand, within HMPREF1058_RS04830at 306.978 kb on - strand, within HMPREF1058_RS04830at 306.978 kb on - strand, within HMPREF1058_RS04830at 306.980 kb on - strand, within HMPREF1058_RS04830at 306.989 kb on + strand, within HMPREF1058_RS04830at 306.990 kb on - strand, within HMPREF1058_RS04830at 306.994 kb on - strand, within HMPREF1058_RS04830at 306.996 kb on - strand, within HMPREF1058_RS04830at 307.098 kb on - strand, within HMPREF1058_RS04830at 307.103 kb on - strand, within HMPREF1058_RS04830at 307.234 kb on + strand, within HMPREF1058_RS04830at 307.328 kb on + strandat 307.328 kb on + strandat 307.330 kb on + strandat 307.330 kb on + strandat 307.330 kb on + strandat 307.331 kb on - strandat 307.331 kb on - strandat 307.401 kb on + strandat 307.401 kb on + strandat 307.405 kb on + strandat 307.496 kb on + strandat 307.496 kb on + strandat 307.497 kb on - strandat 307.503 kb on - strandat 307.532 kb on - strandat 307.680 kb on + strand, within HMPREF1058_RS04825at 307.788 kb on + strand, within HMPREF1058_RS04825at 307.811 kb on - strand, within HMPREF1058_RS04825at 307.812 kb on + strand, within HMPREF1058_RS04825at 307.819 kb on - strandat 307.852 kb on - strand, within HMPREF1058_RS04825at 307.853 kb on + strand, within HMPREF1058_RS04825at 308.115 kb on + strand, within HMPREF1058_RS04825at 308.117 kb on + strandat 308.156 kb on - strandat 308.174 kb on - strandat 308.277 kb on + strandat 308.286 kb on + strandat 308.299 kb on - strandat 308.326 kb on - strandat 308.346 kb on - strandat 308.363 kb on + strand, within HMPREF1058_RS04820at 308.369 kb on + strand, within HMPREF1058_RS04820at 308.369 kb on + strand, within HMPREF1058_RS04820at 308.370 kb on - strand, within HMPREF1058_RS04820at 308.397 kb on + strand, within HMPREF1058_RS04820at 308.418 kb on + strand, within HMPREF1058_RS04820at 308.418 kb on + strand, within HMPREF1058_RS04820at 308.420 kb on + strand, within HMPREF1058_RS04820at 308.476 kb on - strand, within HMPREF1058_RS04820at 308.500 kb on + strand, within HMPREF1058_RS04820at 308.500 kb on + strand, within HMPREF1058_RS04820at 308.501 kb on - strand, within HMPREF1058_RS04820at 308.550 kb on + strand, within HMPREF1058_RS04820at 308.550 kb on + strand, within HMPREF1058_RS04820at 308.550 kb on + strand, within HMPREF1058_RS04820at 308.553 kb on - strand, within HMPREF1058_RS04820at 308.622 kb on - strand, within HMPREF1058_RS04820at 308.639 kb on - strand, within HMPREF1058_RS04820at 308.642 kb on + strand, within HMPREF1058_RS04820at 308.698 kb on + strand, within HMPREF1058_RS04820at 308.725 kb on + strand, within HMPREF1058_RS04820at 308.763 kb on + strand, within HMPREF1058_RS04820at 308.778 kb on - strand, within HMPREF1058_RS04820at 308.778 kb on - strand, within HMPREF1058_RS04820at 308.809 kb on - strand, within HMPREF1058_RS04820at 308.838 kb on + strandat 308.838 kb on + strandat 308.977 kb on + strandat 309.003 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
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306,659 - HMPREF1058_RS04830 0.27 +0.1
306,659 - HMPREF1058_RS04830 0.27 -0.4
306,664 + HMPREF1058_RS04830 0.27 +0.1
306,665 - HMPREF1058_RS04830 0.28 +0.2
306,699 - HMPREF1058_RS04830 0.31 -3.0
306,833 + HMPREF1058_RS04830 0.44 -1.4
306,833 + HMPREF1058_RS04830 0.44 +0.6
306,833 + HMPREF1058_RS04830 0.44 -0.2
306,833 + HMPREF1058_RS04830 0.44 +2.0
306,833 + HMPREF1058_RS04830 0.44 -1.3
306,833 + HMPREF1058_RS04830 0.44 -0.8
306,834 - HMPREF1058_RS04830 0.44 -0.9
306,834 - HMPREF1058_RS04830 0.44 -0.7
306,834 - HMPREF1058_RS04830 0.44 +1.6
306,834 - HMPREF1058_RS04830 0.44 +0.3
306,834 - HMPREF1058_RS04830 0.44 +0.9
306,834 - HMPREF1058_RS04830 0.44 +0.5
306,835 + HMPREF1058_RS04830 0.44 -0.9
306,835 + HMPREF1058_RS04830 0.44 -0.3
306,836 - HMPREF1058_RS04830 0.44 -2.1
306,836 - HMPREF1058_RS04830 0.44 -2.0
306,836 - HMPREF1058_RS04830 0.44 +1.1
306,860 + HMPREF1058_RS04830 0.47 -0.4
306,861 - HMPREF1058_RS04830 0.47 -0.8
306,867 + HMPREF1058_RS04830 0.47 -0.3
306,867 + HMPREF1058_RS04830 0.47 +1.3
306,867 + HMPREF1058_RS04830 0.47 -0.1
306,868 - HMPREF1058_RS04830 0.47 +0.7
306,941 - HMPREF1058_RS04830 0.55 +0.4
306,977 + HMPREF1058_RS04830 0.58 +2.0
306,978 - HMPREF1058_RS04830 0.58 -1.8
306,978 - HMPREF1058_RS04830 0.58 -1.0
306,980 - HMPREF1058_RS04830 0.58 -0.2
306,989 + HMPREF1058_RS04830 0.59 -2.5
306,990 - HMPREF1058_RS04830 0.59 -2.5
306,994 - HMPREF1058_RS04830 0.60 -1.0
306,996 - HMPREF1058_RS04830 0.60 -2.1
307,098 - HMPREF1058_RS04830 0.70 -1.1
307,103 - HMPREF1058_RS04830 0.70 -1.8
307,234 + HMPREF1058_RS04830 0.83 -0.6
307,328 + +0.7
307,328 + -3.1
307,330 + -1.3
307,330 + -3.0
307,330 + +2.1
307,331 - -1.6
307,331 - -0.6
307,401 + +1.8
307,401 + -1.9
307,405 + +0.7
307,496 + -0.6
307,496 + +0.2
307,497 - -0.8
307,503 - -0.6
307,532 - +0.3
307,680 + HMPREF1058_RS04825 0.27 -1.5
307,788 + HMPREF1058_RS04825 0.41 -0.0
307,811 - HMPREF1058_RS04825 0.44 -2.5
307,812 + HMPREF1058_RS04825 0.45 +0.1
307,819 - +0.3
307,852 - HMPREF1058_RS04825 0.50 -0.8
307,853 + HMPREF1058_RS04825 0.50 -1.4
308,115 + HMPREF1058_RS04825 0.85 -1.6
308,117 + +0.6
308,156 - +0.4
308,174 - -0.7
308,277 + +0.1
308,286 + +2.0
308,299 - +0.6
308,326 - -2.5
308,346 - -1.0
308,363 + HMPREF1058_RS04820 0.11 -0.9
308,369 + HMPREF1058_RS04820 0.12 -0.3
308,369 + HMPREF1058_RS04820 0.12 +0.3
308,370 - HMPREF1058_RS04820 0.12 +1.0
308,397 + HMPREF1058_RS04820 0.17 +0.9
308,418 + HMPREF1058_RS04820 0.20 -0.3
308,418 + HMPREF1058_RS04820 0.20 +0.9
308,420 + HMPREF1058_RS04820 0.20 +1.5
308,476 - HMPREF1058_RS04820 0.30 -0.4
308,500 + HMPREF1058_RS04820 0.34 -1.0
308,500 + HMPREF1058_RS04820 0.34 -0.9
308,501 - HMPREF1058_RS04820 0.34 -1.6
308,550 + HMPREF1058_RS04820 0.42 +1.4
308,550 + HMPREF1058_RS04820 0.42 -0.1
308,550 + HMPREF1058_RS04820 0.42 -2.8
308,553 - HMPREF1058_RS04820 0.43 +0.6
308,622 - HMPREF1058_RS04820 0.55 -0.8
308,639 - HMPREF1058_RS04820 0.58 -0.7
308,642 + HMPREF1058_RS04820 0.58 -0.8
308,698 + HMPREF1058_RS04820 0.68 -0.7
308,725 + HMPREF1058_RS04820 0.72 -0.9
308,763 + HMPREF1058_RS04820 0.79 -0.8
308,778 - HMPREF1058_RS04820 0.81 -0.5
308,778 - HMPREF1058_RS04820 0.81 +0.1
308,809 - HMPREF1058_RS04820 0.86 -0.2
308,838 + -1.9
308,838 + -2.7
308,977 + -1.4
309,003 + -1.4

Or see this region's nucleotide sequence