Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04810 and HMPREF1058_RS04805 overlap by 4 nucleotides HMPREF1058_RS04805 and HMPREF1058_RS04800 overlap by 11 nucleotides
HMPREF1058_RS04810: HMPREF1058_RS04810 - hypothetical protein, at 310,301 to 314,413
_RS04810
HMPREF1058_RS04805: HMPREF1058_RS04805 - hypothetical protein, at 314,410 to 314,895
_RS04805
HMPREF1058_RS04800: HMPREF1058_RS04800 - ankyrin repeat domain-containing protein, at 314,885 to 316,462
_RS04800
Position (kb) 314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 313.417 kb on + strand, within HMPREF1058_RS04810 at 313.430 kb on + strand, within HMPREF1058_RS04810 at 313.586 kb on + strand, within HMPREF1058_RS04810 at 313.591 kb on + strand, within HMPREF1058_RS04810 at 313.768 kb on + strand, within HMPREF1058_RS04810 at 313.768 kb on + strand, within HMPREF1058_RS04810 at 314.153 kb on - strand at 314.213 kb on - strand at 314.320 kb on + strand at 314.377 kb on - strand at 314.417 kb on + strand at 314.418 kb on - strand at 314.722 kb on - strand, within HMPREF1058_RS04805 at 314.754 kb on + strand, within HMPREF1058_RS04805 at 314.755 kb on - strand, within HMPREF1058_RS04805 at 314.755 kb on - strand, within HMPREF1058_RS04805 at 314.760 kb on - strand, within HMPREF1058_RS04805 at 314.804 kb on - strand, within HMPREF1058_RS04805 at 314.845 kb on + strand, within HMPREF1058_RS04805 at 315.010 kb on + strand at 315.013 kb on - strand at 315.020 kb on + strand at 315.020 kb on + strand at 315.034 kb on - strand at 315.089 kb on - strand, within HMPREF1058_RS04800 at 315.435 kb on - strand, within HMPREF1058_RS04800 at 315.853 kb on + strand, within HMPREF1058_RS04800
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 313,417 + HMPREF1058_RS04810 0.76 -1.4 313,430 + HMPREF1058_RS04810 0.76 +1.2 313,586 + HMPREF1058_RS04810 0.80 -2.2 313,591 + HMPREF1058_RS04810 0.80 +1.5 313,768 + HMPREF1058_RS04810 0.84 -1.3 313,768 + HMPREF1058_RS04810 0.84 -0.6 314,153 - -2.5 314,213 - -1.6 314,320 + +0.1 314,377 - +1.8 314,417 + +0.7 314,418 - -0.5 314,722 - HMPREF1058_RS04805 0.64 -3.6 314,754 + HMPREF1058_RS04805 0.71 -0.3 314,755 - HMPREF1058_RS04805 0.71 -0.8 314,755 - HMPREF1058_RS04805 0.71 -1.0 314,760 - HMPREF1058_RS04805 0.72 -2.0 314,804 - HMPREF1058_RS04805 0.81 +0.0 314,845 + HMPREF1058_RS04805 0.90 +0.1 315,010 + -1.6 315,013 - -2.1 315,020 + -2.8 315,020 + -2.5 315,034 - +0.5 315,089 - HMPREF1058_RS04800 0.13 -1.3 315,435 - HMPREF1058_RS04800 0.35 -0.6 315,853 + HMPREF1058_RS04800 0.61 +0.6
Or see this region's nucleotide sequence