Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04620 and HMPREF1058_RS04615 are separated by 95 nucleotides HMPREF1058_RS04615 and HMPREF1058_RS04610 are separated by 104 nucleotides HMPREF1058_RS04610 and HMPREF1058_RS21515 are separated by 55 nucleotides HMPREF1058_RS21515 and HMPREF1058_RS04605 overlap by 22 nucleotides
HMPREF1058_RS04620: HMPREF1058_RS04620 - hypothetical protein, at 1 to 215
_RS04620
HMPREF1058_RS04615: HMPREF1058_RS04615 - hypothetical protein, at 311 to 829
_RS04615
HMPREF1058_RS04610: HMPREF1058_RS04610 - ATP-binding protein, at 934 to 1,530
_RS04610
HMPREF1058_RS21515: HMPREF1058_RS21515 - hypothetical protein, at 1,586 to 2,380
_RS21515
HMPREF1058_RS04605: HMPREF1058_RS04605 - HNH endonuclease, at 2,359 to 2,856
_RS04605
Position (kb) 0
1
2 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 0.191 kb on + strand, within HMPREF1058_RS04620 at 0.215 kb on + strand at 0.216 kb on - strand at 0.397 kb on + strand, within HMPREF1058_RS04615 at 0.398 kb on - strand at 0.406 kb on - strand, within HMPREF1058_RS04615 at 0.477 kb on + strand, within HMPREF1058_RS04615 at 0.531 kb on - strand, within HMPREF1058_RS04615 at 0.541 kb on + strand, within HMPREF1058_RS04615 at 0.647 kb on - strand, within HMPREF1058_RS04615 at 0.647 kb on - strand at 0.648 kb on + strand, within HMPREF1058_RS04615 at 0.664 kb on - strand, within HMPREF1058_RS04615 at 0.856 kb on - strand at 0.859 kb on + strand at 0.859 kb on + strand at 0.859 kb on + strand at 0.863 kb on + strand at 0.864 kb on - strand at 0.923 kb on + strand at 0.923 kb on + strand at 0.928 kb on + strand at 0.929 kb on - strand at 1.052 kb on + strand, within HMPREF1058_RS04610 at 1.053 kb on - strand, within HMPREF1058_RS04610 at 1.159 kb on + strand, within HMPREF1058_RS04610 at 1.160 kb on - strand, within HMPREF1058_RS04610 at 1.221 kb on - strand, within HMPREF1058_RS04610 at 1.226 kb on + strand, within HMPREF1058_RS04610 at 1.234 kb on + strand, within HMPREF1058_RS04610 at 1.234 kb on + strand, within HMPREF1058_RS04610 at 1.253 kb on + strand, within HMPREF1058_RS04610 at 1.446 kb on - strand, within HMPREF1058_RS04610 at 1.448 kb on + strand, within HMPREF1058_RS04610 at 1.602 kb on + strand at 1.631 kb on + strand at 1.631 kb on + strand at 1.631 kb on + strand at 1.665 kb on + strand at 1.736 kb on - strand, within HMPREF1058_RS21515 at 1.836 kb on + strand, within HMPREF1058_RS21515 at 1.884 kb on + strand, within HMPREF1058_RS21515 at 1.885 kb on - strand, within HMPREF1058_RS21515 at 1.885 kb on - strand, within HMPREF1058_RS21515 at 1.999 kb on + strand, within HMPREF1058_RS21515 at 2.024 kb on - strand, within HMPREF1058_RS21515 at 2.033 kb on + strand, within HMPREF1058_RS21515 at 2.034 kb on - strand, within HMPREF1058_RS21515 at 2.107 kb on + strand, within HMPREF1058_RS21515 at 2.161 kb on + strand, within HMPREF1058_RS21515 at 2.191 kb on - strand, within HMPREF1058_RS21515 at 2.336 kb on - strand at 2.394 kb on + strand at 2.529 kb on + strand, within HMPREF1058_RS04605
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 191 + HMPREF1058_RS04620 0.88 -1.2 215 + -0.5 216 - +1.8 397 + HMPREF1058_RS04615 0.17 -1.1 398 - +0.3 406 - HMPREF1058_RS04615 0.18 -4.0 477 + HMPREF1058_RS04615 0.32 -0.1 531 - HMPREF1058_RS04615 0.42 -1.1 541 + HMPREF1058_RS04615 0.44 -0.0 647 - HMPREF1058_RS04615 0.65 -3.6 647 - +0.1 648 + HMPREF1058_RS04615 0.65 -2.5 664 - HMPREF1058_RS04615 0.68 -0.6 856 - +2.9 859 + -2.0 859 + -0.8 859 + -0.5 863 + +1.0 864 - -1.2 923 + -2.0 923 + -2.4 928 + -1.0 929 - -0.2 1,052 + HMPREF1058_RS04610 0.20 -0.3 1,053 - HMPREF1058_RS04610 0.20 -1.9 1,159 + HMPREF1058_RS04610 0.38 -0.7 1,160 - HMPREF1058_RS04610 0.38 -2.7 1,221 - HMPREF1058_RS04610 0.48 -3.0 1,226 + HMPREF1058_RS04610 0.49 -1.6 1,234 + HMPREF1058_RS04610 0.50 +0.4 1,234 + HMPREF1058_RS04610 0.50 -2.3 1,253 + HMPREF1058_RS04610 0.53 -2.0 1,446 - HMPREF1058_RS04610 0.86 -0.8 1,448 + HMPREF1058_RS04610 0.86 +1.3 1,602 + -1.0 1,631 + +0.1 1,631 + -0.1 1,631 + +0.9 1,665 + -1.5 1,736 - HMPREF1058_RS21515 0.19 -4.0 1,836 + HMPREF1058_RS21515 0.31 -2.3 1,884 + HMPREF1058_RS21515 0.37 -1.2 1,885 - HMPREF1058_RS21515 0.38 -0.3 1,885 - HMPREF1058_RS21515 0.38 -2.7 1,999 + HMPREF1058_RS21515 0.52 -0.4 2,024 - HMPREF1058_RS21515 0.55 -2.0 2,033 + HMPREF1058_RS21515 0.56 -3.4 2,034 - HMPREF1058_RS21515 0.56 +1.9 2,107 + HMPREF1058_RS21515 0.66 +1.3 2,161 + HMPREF1058_RS21515 0.72 -2.1 2,191 - HMPREF1058_RS21515 0.76 -1.2 2,336 - +0.1 2,394 + +1.5 2,529 + HMPREF1058_RS04605 0.34 -1.9
Or see this region's nucleotide sequence