Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04570 and HMPREF1058_RS04565 are separated by 15 nucleotides HMPREF1058_RS04565 and HMPREF1058_RS04560 are separated by 13 nucleotides HMPREF1058_RS04560 and HMPREF1058_RS04555 overlap by 4 nucleotides
HMPREF1058_RS04570: HMPREF1058_RS04570 - DUF1351 domain-containing protein, at 6,634 to 7,710
_RS04570
HMPREF1058_RS04565: HMPREF1058_RS04565 - hypothetical protein, at 7,726 to 8,388
_RS04565
HMPREF1058_RS04560: HMPREF1058_RS04560 - hypothetical protein, at 8,402 to 8,863
_RS04560
HMPREF1058_RS04555: HMPREF1058_RS04555 - YqaJ viral recombinase family protein, at 8,860 to 9,531
_RS04555
Position (kb) 7
8
9 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 6.740 kb on + strand at 6.876 kb on + strand, within HMPREF1058_RS04570 at 7.148 kb on + strand, within HMPREF1058_RS04570 at 7.151 kb on + strand, within HMPREF1058_RS04570 at 7.155 kb on + strand, within HMPREF1058_RS04570 at 7.243 kb on + strand, within HMPREF1058_RS04570 at 7.364 kb on + strand, within HMPREF1058_RS04570 at 7.581 kb on + strand, within HMPREF1058_RS04570 at 7.586 kb on + strand, within HMPREF1058_RS04570 at 7.638 kb on + strand at 7.638 kb on + strand at 7.696 kb on + strand at 7.697 kb on - strand at 7.752 kb on + strand at 7.795 kb on + strand at 7.795 kb on + strand, within HMPREF1058_RS04565 at 7.829 kb on + strand, within HMPREF1058_RS04565 at 7.854 kb on + strand, within HMPREF1058_RS04565 at 7.854 kb on + strand, within HMPREF1058_RS04565 at 7.958 kb on + strand, within HMPREF1058_RS04565 at 7.989 kb on + strand, within HMPREF1058_RS04565 at 8.248 kb on + strand, within HMPREF1058_RS04565 at 8.322 kb on + strand at 8.322 kb on + strand at 8.413 kb on + strand at 8.426 kb on + strand at 8.488 kb on + strand, within HMPREF1058_RS04560 at 8.579 kb on + strand, within HMPREF1058_RS04560 at 8.592 kb on + strand, within HMPREF1058_RS04560 at 8.726 kb on + strand, within HMPREF1058_RS04560 at 8.816 kb on + strand, within HMPREF1058_RS04560 at 8.821 kb on + strand at 9.027 kb on + strand, within HMPREF1058_RS04555 at 9.099 kb on + strand, within HMPREF1058_RS04555 at 9.101 kb on + strand, within HMPREF1058_RS04555 at 9.240 kb on + strand, within HMPREF1058_RS04555 at 9.263 kb on + strand, within HMPREF1058_RS04555
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 6,740 + -2.9 6,876 + HMPREF1058_RS04570 0.22 -2.9 7,148 + HMPREF1058_RS04570 0.48 -0.9 7,151 + HMPREF1058_RS04570 0.48 -1.2 7,155 + HMPREF1058_RS04570 0.48 -0.5 7,243 + HMPREF1058_RS04570 0.57 -1.3 7,364 + HMPREF1058_RS04570 0.68 +1.1 7,581 + HMPREF1058_RS04570 0.88 +0.0 7,586 + HMPREF1058_RS04570 0.88 +0.3 7,638 + -0.8 7,638 + -1.3 7,696 + -2.7 7,697 - -2.1 7,752 + -0.2 7,795 + +0.9 7,795 + HMPREF1058_RS04565 0.10 +0.2 7,829 + HMPREF1058_RS04565 0.16 -1.7 7,854 + HMPREF1058_RS04565 0.19 -2.9 7,854 + HMPREF1058_RS04565 0.19 -2.5 7,958 + HMPREF1058_RS04565 0.35 -0.1 7,989 + HMPREF1058_RS04565 0.40 -0.7 8,248 + HMPREF1058_RS04565 0.79 -2.4 8,322 + +0.2 8,322 + +0.0 8,413 + -0.7 8,426 + -0.9 8,488 + HMPREF1058_RS04560 0.19 -0.6 8,579 + HMPREF1058_RS04560 0.38 +0.1 8,592 + HMPREF1058_RS04560 0.41 +0.8 8,726 + HMPREF1058_RS04560 0.70 +0.9 8,816 + HMPREF1058_RS04560 0.90 +0.9 8,821 + +2.2 9,027 + HMPREF1058_RS04555 0.25 -0.5 9,099 + HMPREF1058_RS04555 0.36 -1.6 9,101 + HMPREF1058_RS04555 0.36 +2.4 9,240 + HMPREF1058_RS04555 0.57 -0.4 9,263 + HMPREF1058_RS04555 0.60 -1.4
Or see this region's nucleotide sequence