Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS04370

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
48,874	+				-2.4
48,885	+				-1.7
48,886	-				+1.2
48,909	-				-2.6
48,970	+				-2.3
49,086	+		HMPREF1058_RS04375	0.13	-1.6
49,121	-		HMPREF1058_RS04375	0.17	-1.6
49,276	+		HMPREF1058_RS04375	0.34	+2.7
49,322	-		HMPREF1058_RS04375	0.39	-1.5
49,322	-		HMPREF1058_RS04375	0.39	-0.9
49,324	-		HMPREF1058_RS04375	0.40	+0.0
49,330	-		HMPREF1058_RS04375	0.40	-0.1
49,335	-		HMPREF1058_RS04375	0.41	+2.0
49,335	-		HMPREF1058_RS04375	0.41	+1.5
49,337	-		HMPREF1058_RS04375	0.41	-0.7
49,337	-		HMPREF1058_RS04375	0.41	+0.5
49,337	-		HMPREF1058_RS04375	0.41	+0.2
49,338	+		HMPREF1058_RS04375	0.41	+0.4
49,408	+		HMPREF1058_RS04375	0.49	-0.7
49,408	+		HMPREF1058_RS04375	0.49	+0.4
49,409	-		HMPREF1058_RS04375	0.49	-3.4
49,503	+		HMPREF1058_RS04375	0.60	-0.9
49,528	+		HMPREF1058_RS04375	0.62	-3.7
49,610	-		HMPREF1058_RS04375	0.72	-2.7
49,775	-				-3.4
49,833	+				+1.3
49,834	-				-0.1
49,860	+				+0.6
49,864	+				-2.5
49,865	-				-0.6
49,866	+				-0.1
49,876	+				-0.3
49,876	+				-2.4
49,877	-				-0.2
49,878	+				-3.4
49,878	+				-0.1
49,953	+				+0.3
49,954	-				+0.3
49,956	+				-0.1
49,956	+				+0.6
50,004	-		HMPREF1058_RS04370	0.13	-0.6
50,023	+		HMPREF1058_RS04370	0.15	-0.1
50,068	+		HMPREF1058_RS04370	0.19	-1.6
50,101	+		HMPREF1058_RS04370	0.22	+0.1
50,169	+		HMPREF1058_RS04370	0.29	+0.1
50,170	-		HMPREF1058_RS04370	0.29	-0.6
50,233	+		HMPREF1058_RS04370	0.35	+0.6
50,234	-		HMPREF1058_RS04370	0.35	+0.3
50,234	-		HMPREF1058_RS04370	0.35	-1.4
50,322	+		HMPREF1058_RS04370	0.44	-0.3
50,322	+		HMPREF1058_RS04370	0.44	-0.4
50,334	+		HMPREF1058_RS04370	0.45	-0.7
50,545	+		HMPREF1058_RS04370	0.65	-1.4
50,701	+		HMPREF1058_RS04370	0.80	-1.3
50,701	+		HMPREF1058_RS04370	0.80	+1.7
50,709	+		HMPREF1058_RS04370	0.81	-0.1
50,709	+		HMPREF1058_RS04370	0.81	-0.6
50,714	+		HMPREF1058_RS04370	0.82	+0.6
50,714	+		HMPREF1058_RS04370	0.82	+0.6
50,714	+		HMPREF1058_RS04370	0.82	-0.4
50,715	-		HMPREF1058_RS04370	0.82	+1.3
50,715	-		HMPREF1058_RS04370	0.82	-2.5
50,818	+				+0.6
50,818	+				-0.8
50,819	-				-1.0
50,851	-				+0.6
50,891	-				-0.1
50,904	-				-3.1
51,074	+				-0.9
51,107	+				+0.5
51,108	-				+0.8
51,109	+				-0.3
51,257	+				+1.4
51,257	+				+0.6
51,313	-				-2.3
51,350	+				-1.4
51,350	+				+0.3
51,351	-				-1.4
51,351	-				+0.1
51,351	-				-1.2
51,375	-				-1.4
51,375	-				+2.4
51,436	+		HMPREF1058_RS04365	0.11	+2.4
51,437	-		HMPREF1058_RS04365	0.11	+1.2
51,473	+		HMPREF1058_RS04365	0.12	-0.9
51,503	+		HMPREF1058_RS04365	0.12	+1.9
51,504	-		HMPREF1058_RS04365	0.12	-0.5
51,636	+		HMPREF1058_RS04365	0.15	+0.1
51,673	+		HMPREF1058_RS04365	0.16	-1.0
51,675	+		HMPREF1058_RS04365	0.16	-1.4
51,676	-		HMPREF1058_RS04365	0.16	+0.1
51,760	-		HMPREF1058_RS04365	0.18	-1.4
51,762	+		HMPREF1058_RS04365	0.18	+0.9
51,777	+		HMPREF1058_RS04365	0.18	+1.1
51,777	+		HMPREF1058_RS04365	0.18	+1.3
51,778	-		HMPREF1058_RS04365	0.19	-2.1
51,782	+		HMPREF1058_RS04365	0.19	-0.7
51,785	-		HMPREF1058_RS04365	0.19	+1.6
51,798	+		HMPREF1058_RS04365	0.19	+0.8
51,805	+		HMPREF1058_RS04365	0.19	+0.3
51,805	+		HMPREF1058_RS04365	0.19	+1.3
51,806	-		HMPREF1058_RS04365	0.19	-1.2
51,806	-		HMPREF1058_RS04365	0.19	-1.4
51,806	-		HMPREF1058_RS04365	0.19	-0.4
51,876	-		HMPREF1058_RS04365	0.21	-1.5
51,878	+		HMPREF1058_RS04365	0.21	-1.3
51,879	+		HMPREF1058_RS04365	0.21	+0.9
51,879	-		HMPREF1058_RS04365	0.21	-0.8