Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04365 and HMPREF1058_RS04360 are separated by 64 nucleotides HMPREF1058_RS04360 and HMPREF1058_RS04355 are separated by 193 nucleotides HMPREF1058_RS04355 and HMPREF1058_RS04350 are separated by 111 nucleotides
HMPREF1058_RS04365: HMPREF1058_RS04365 - translocation/assembly module TamB, at 50,952 to 55,412
_RS04365
HMPREF1058_RS04360: HMPREF1058_RS04360 - DUF308 domain-containing protein, at 55,477 to 56,040
_RS04360
HMPREF1058_RS04355: HMPREF1058_RS04355 - sodium:proton antiporter, at 56,234 to 57,685
_RS04355
HMPREF1058_RS04350: HMPREF1058_RS04350 - C1 family peptidase, at 57,797 to 59,173
_RS04350
Position (kb) 56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.284 kb on - strand at 55.316 kb on - strand at 55.349 kb on - strand at 55.364 kb on + strand at 55.376 kb on + strand at 55.400 kb on + strand at 55.447 kb on + strand at 55.561 kb on - strand, within HMPREF1058_RS04360 at 55.562 kb on + strand, within HMPREF1058_RS04360 at 55.563 kb on - strand, within HMPREF1058_RS04360 at 55.563 kb on - strand, within HMPREF1058_RS04360 at 55.563 kb on - strand, within HMPREF1058_RS04360 at 55.563 kb on - strand, within HMPREF1058_RS04360 at 55.701 kb on + strand, within HMPREF1058_RS04360 at 55.772 kb on - strand, within HMPREF1058_RS04360 at 55.779 kb on - strand, within HMPREF1058_RS04360 at 55.782 kb on + strand, within HMPREF1058_RS04360 at 55.804 kb on - strand, within HMPREF1058_RS04360 at 55.818 kb on - strand, within HMPREF1058_RS04360 at 55.923 kb on - strand, within HMPREF1058_RS04360 at 55.952 kb on - strand, within HMPREF1058_RS04360 at 56.048 kb on - strand at 56.061 kb on + strand at 56.062 kb on - strand at 56.295 kb on + strand at 56.317 kb on + strand at 56.318 kb on - strand at 56.318 kb on - strand at 56.542 kb on - strand, within HMPREF1058_RS04355 at 56.543 kb on + strand, within HMPREF1058_RS04355 at 56.543 kb on + strand, within HMPREF1058_RS04355 at 56.596 kb on + strand, within HMPREF1058_RS04355 at 56.597 kb on - strand, within HMPREF1058_RS04355 at 56.611 kb on - strand, within HMPREF1058_RS04355 at 56.941 kb on + strand, within HMPREF1058_RS04355 at 56.950 kb on + strand, within HMPREF1058_RS04355 at 57.005 kb on - strand, within HMPREF1058_RS04355 at 57.027 kb on + strand, within HMPREF1058_RS04355 at 57.028 kb on - strand, within HMPREF1058_RS04355 at 57.028 kb on - strand, within HMPREF1058_RS04355 at 57.037 kb on + strand, within HMPREF1058_RS04355 at 57.085 kb on - strand, within HMPREF1058_RS04355 at 57.312 kb on + strand, within HMPREF1058_RS04355 at 57.313 kb on - strand at 57.313 kb on - strand, within HMPREF1058_RS04355 at 57.404 kb on - strand, within HMPREF1058_RS04355 at 57.443 kb on + strand, within HMPREF1058_RS04355 at 57.444 kb on - strand, within HMPREF1058_RS04355 at 57.530 kb on - strand, within HMPREF1058_RS04355 at 57.579 kb on - strand at 57.579 kb on - strand at 57.637 kb on - strand at 57.646 kb on + strand at 57.647 kb on - strand at 57.647 kb on - strand at 57.647 kb on - strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.708 kb on + strand at 57.708 kb on + strand at 57.708 kb on + strand at 57.710 kb on + strand at 57.902 kb on + strand at 57.903 kb on - strand at 57.955 kb on + strand, within HMPREF1058_RS04350 at 58.023 kb on + strand, within HMPREF1058_RS04350 at 58.297 kb on + strand, within HMPREF1058_RS04350 at 58.493 kb on - strand, within HMPREF1058_RS04350 at 58.493 kb on - strand, within HMPREF1058_RS04350 at 58.493 kb on - strand, within HMPREF1058_RS04350 at 58.583 kb on + strand, within HMPREF1058_RS04350 at 58.620 kb on - strand, within HMPREF1058_RS04350 at 58.620 kb on - strand, within HMPREF1058_RS04350 at 58.623 kb on + strand, within HMPREF1058_RS04350 at 58.624 kb on - strand, within HMPREF1058_RS04350
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 55,284 - -0.4 55,316 - -0.1 55,349 - -2.1 55,364 + -0.8 55,376 + +0.8 55,400 + +2.5 55,447 + -0.1 55,561 - HMPREF1058_RS04360 0.15 +0.8 55,562 + HMPREF1058_RS04360 0.15 -1.4 55,563 - HMPREF1058_RS04360 0.15 -0.8 55,563 - HMPREF1058_RS04360 0.15 -1.2 55,563 - HMPREF1058_RS04360 0.15 +0.5 55,563 - HMPREF1058_RS04360 0.15 +0.4 55,701 + HMPREF1058_RS04360 0.40 -0.3 55,772 - HMPREF1058_RS04360 0.52 -2.9 55,779 - HMPREF1058_RS04360 0.54 +0.9 55,782 + HMPREF1058_RS04360 0.54 -2.4 55,804 - HMPREF1058_RS04360 0.58 -0.7 55,818 - HMPREF1058_RS04360 0.60 +0.4 55,923 - HMPREF1058_RS04360 0.79 +0.4 55,952 - HMPREF1058_RS04360 0.84 +2.4 56,048 - +0.5 56,061 + -2.4 56,062 - +1.9 56,295 + +0.2 56,317 + +0.3 56,318 - +0.4 56,318 - -0.0 56,542 - HMPREF1058_RS04355 0.21 -2.6 56,543 + HMPREF1058_RS04355 0.21 -2.7 56,543 + HMPREF1058_RS04355 0.21 -0.1 56,596 + HMPREF1058_RS04355 0.25 -1.7 56,597 - HMPREF1058_RS04355 0.25 -1.7 56,611 - HMPREF1058_RS04355 0.26 -0.4 56,941 + HMPREF1058_RS04355 0.49 -0.5 56,950 + HMPREF1058_RS04355 0.49 -0.6 57,005 - HMPREF1058_RS04355 0.53 -0.8 57,027 + HMPREF1058_RS04355 0.55 -0.8 57,028 - HMPREF1058_RS04355 0.55 -1.5 57,028 - HMPREF1058_RS04355 0.55 +0.0 57,037 + HMPREF1058_RS04355 0.55 -1.5 57,085 - HMPREF1058_RS04355 0.59 +2.5 57,312 + HMPREF1058_RS04355 0.74 -1.3 57,313 - +0.6 57,313 - HMPREF1058_RS04355 0.74 -1.4 57,404 - HMPREF1058_RS04355 0.81 +1.6 57,443 + HMPREF1058_RS04355 0.83 -3.2 57,444 - HMPREF1058_RS04355 0.83 -1.4 57,530 - HMPREF1058_RS04355 0.89 +0.1 57,579 - -0.4 57,579 - +1.3 57,637 - -0.1 57,646 + -2.6 57,647 - -0.6 57,647 - -0.9 57,647 - +0.1 57,706 + -0.9 57,706 + -0.9 57,708 + +0.6 57,708 + +1.3 57,708 + +0.4 57,710 + -0.4 57,902 + +0.4 57,903 - -0.6 57,955 + HMPREF1058_RS04350 0.11 -1.0 58,023 + HMPREF1058_RS04350 0.16 +0.1 58,297 + HMPREF1058_RS04350 0.36 +0.0 58,493 - HMPREF1058_RS04350 0.51 -0.4 58,493 - HMPREF1058_RS04350 0.51 -0.3 58,493 - HMPREF1058_RS04350 0.51 -2.2 58,583 + HMPREF1058_RS04350 0.57 -0.2 58,620 - HMPREF1058_RS04350 0.60 -0.6 58,620 - HMPREF1058_RS04350 0.60 -0.2 58,623 + HMPREF1058_RS04350 0.60 +0.9 58,624 - HMPREF1058_RS04350 0.60 -0.2
Or see this region's nucleotide sequence