Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03980

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
146,426	-				+0.9
146,426	-				+1.1
146,426	-				+0.2
146,428	-				+1.2
146,452	-				+0.3
146,456	-				-0.3
146,521	+				-0.7
146,573	-				-1.0
146,581	+				-1.3
146,625	+		HMPREF1058_RS03980	0.15	+0.3
146,871	+		HMPREF1058_RS03980	0.52	-1.1
146,879	-		HMPREF1058_RS03980	0.53	+0.3
147,060	-		HMPREF1058_RS03980	0.80	-0.6
147,269	+				-1.4
147,331	+				+1.0
147,524	+				-2.3
148,192	-		HMPREF1058_RS03975	0.69	+0.1