Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03920 and HMPREF1058_RS03915 are separated by 114 nucleotides HMPREF1058_RS03915 and HMPREF1058_RS03910 are separated by 3 nucleotides
HMPREF1058_RS03920: HMPREF1058_RS03920 - proline--tRNA ligase, at 157,121 to 158,611
_RS03920
HMPREF1058_RS03915: HMPREF1058_RS03915 - hypothetical protein, at 158,726 to 159,877
_RS03915
HMPREF1058_RS03910: HMPREF1058_RS03910 - alpha amylase C-terminal domain-containing protein, at 159,881 to 161,908
_RS03910
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 158.699 kb on + strand at 158.743 kb on - strand at 158.932 kb on + strand, within HMPREF1058_RS03915 at 158.933 kb on - strand, within HMPREF1058_RS03915 at 158.953 kb on + strand, within HMPREF1058_RS03915 at 158.954 kb on - strand, within HMPREF1058_RS03915 at 159.007 kb on + strand, within HMPREF1058_RS03915 at 159.008 kb on - strand, within HMPREF1058_RS03915 at 159.105 kb on + strand, within HMPREF1058_RS03915 at 159.106 kb on - strand, within HMPREF1058_RS03915 at 159.112 kb on - strand, within HMPREF1058_RS03915 at 159.118 kb on + strand, within HMPREF1058_RS03915 at 159.180 kb on + strand, within HMPREF1058_RS03915 at 159.184 kb on - strand, within HMPREF1058_RS03915 at 159.232 kb on + strand, within HMPREF1058_RS03915 at 159.233 kb on - strand, within HMPREF1058_RS03915 at 159.233 kb on - strand, within HMPREF1058_RS03915 at 159.371 kb on + strand, within HMPREF1058_RS03915 at 159.372 kb on - strand, within HMPREF1058_RS03915 at 159.407 kb on - strand, within HMPREF1058_RS03915 at 159.481 kb on + strand, within HMPREF1058_RS03915 at 159.494 kb on + strand, within HMPREF1058_RS03915 at 159.497 kb on - strand, within HMPREF1058_RS03915 at 159.497 kb on - strand, within HMPREF1058_RS03915 at 159.498 kb on + strand, within HMPREF1058_RS03915 at 159.498 kb on + strand, within HMPREF1058_RS03915 at 159.498 kb on + strand, within HMPREF1058_RS03915 at 159.498 kb on + strand, within HMPREF1058_RS03915 at 159.499 kb on - strand, within HMPREF1058_RS03915 at 159.499 kb on - strand, within HMPREF1058_RS03915 at 159.499 kb on - strand, within HMPREF1058_RS03915 at 159.500 kb on + strand, within HMPREF1058_RS03915 at 159.500 kb on + strand, within HMPREF1058_RS03915 at 159.501 kb on - strand, within HMPREF1058_RS03915 at 159.501 kb on - strand, within HMPREF1058_RS03915 at 159.501 kb on - strand, within HMPREF1058_RS03915 at 159.535 kb on + strand, within HMPREF1058_RS03915 at 159.677 kb on + strand, within HMPREF1058_RS03915 at 159.695 kb on - strand, within HMPREF1058_RS03915 at 159.758 kb on + strand, within HMPREF1058_RS03915 at 159.762 kb on - strand at 159.794 kb on - strand at 159.853 kb on - strand at 159.927 kb on + strand at 159.928 kb on - strand at 159.950 kb on - strand at 159.958 kb on + strand at 159.959 kb on - strand at 159.990 kb on - strand at 159.990 kb on - strand at 160.054 kb on - strand at 160.054 kb on - strand at 160.173 kb on - strand, within HMPREF1058_RS03910 at 160.307 kb on - strand, within HMPREF1058_RS03910 at 160.307 kb on - strand, within HMPREF1058_RS03910 at 160.384 kb on - strand, within HMPREF1058_RS03910 at 160.427 kb on - strand, within HMPREF1058_RS03910 at 160.485 kb on + strand, within HMPREF1058_RS03910 at 160.486 kb on - strand, within HMPREF1058_RS03910 at 160.500 kb on - strand, within HMPREF1058_RS03910 at 160.516 kb on + strand, within HMPREF1058_RS03910 at 160.517 kb on - strand, within HMPREF1058_RS03910 at 160.565 kb on - strand at 160.669 kb on + strand, within HMPREF1058_RS03910 at 160.775 kb on + strand, within HMPREF1058_RS03910 at 160.840 kb on + strand, within HMPREF1058_RS03910 at 160.845 kb on + strand, within HMPREF1058_RS03910 at 160.858 kb on + strand, within HMPREF1058_RS03910
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 158,699 + -1.6 158,743 - -0.5 158,932 + HMPREF1058_RS03915 0.18 +0.1 158,933 - HMPREF1058_RS03915 0.18 -3.1 158,953 + HMPREF1058_RS03915 0.20 -0.7 158,954 - HMPREF1058_RS03915 0.20 -0.3 159,007 + HMPREF1058_RS03915 0.24 -1.6 159,008 - HMPREF1058_RS03915 0.24 -2.1 159,105 + HMPREF1058_RS03915 0.33 -1.0 159,106 - HMPREF1058_RS03915 0.33 -0.7 159,112 - HMPREF1058_RS03915 0.34 -0.3 159,118 + HMPREF1058_RS03915 0.34 -0.7 159,180 + HMPREF1058_RS03915 0.39 -0.6 159,184 - HMPREF1058_RS03915 0.40 +2.9 159,232 + HMPREF1058_RS03915 0.44 -2.1 159,233 - HMPREF1058_RS03915 0.44 -2.4 159,233 - HMPREF1058_RS03915 0.44 -0.9 159,371 + HMPREF1058_RS03915 0.56 -0.8 159,372 - HMPREF1058_RS03915 0.56 +0.4 159,407 - HMPREF1058_RS03915 0.59 -1.7 159,481 + HMPREF1058_RS03915 0.66 +0.3 159,494 + HMPREF1058_RS03915 0.67 +1.3 159,497 - HMPREF1058_RS03915 0.67 -0.6 159,497 - HMPREF1058_RS03915 0.67 -0.3 159,498 + HMPREF1058_RS03915 0.67 -2.5 159,498 + HMPREF1058_RS03915 0.67 -0.4 159,498 + HMPREF1058_RS03915 0.67 -2.9 159,498 + HMPREF1058_RS03915 0.67 +1.0 159,499 - HMPREF1058_RS03915 0.67 -1.2 159,499 - HMPREF1058_RS03915 0.67 -1.5 159,499 - HMPREF1058_RS03915 0.67 -2.5 159,500 + HMPREF1058_RS03915 0.67 +1.9 159,500 + HMPREF1058_RS03915 0.67 -0.6 159,501 - HMPREF1058_RS03915 0.67 -0.6 159,501 - HMPREF1058_RS03915 0.67 -1.0 159,501 - HMPREF1058_RS03915 0.67 -1.5 159,535 + HMPREF1058_RS03915 0.70 -0.9 159,677 + HMPREF1058_RS03915 0.83 -0.8 159,695 - HMPREF1058_RS03915 0.84 -1.4 159,758 + HMPREF1058_RS03915 0.90 -1.8 159,762 - -1.3 159,794 - +0.9 159,853 - -2.2 159,927 + +2.9 159,928 - +0.5 159,950 - -0.7 159,958 + +1.9 159,959 - -0.4 159,990 - +1.7 159,990 - +0.5 160,054 - -1.6 160,054 - +1.2 160,173 - HMPREF1058_RS03910 0.14 -1.0 160,307 - HMPREF1058_RS03910 0.21 +0.0 160,307 - HMPREF1058_RS03910 0.21 -0.2 160,384 - HMPREF1058_RS03910 0.25 +2.4 160,427 - HMPREF1058_RS03910 0.27 -0.4 160,485 + HMPREF1058_RS03910 0.30 +0.7 160,486 - HMPREF1058_RS03910 0.30 -0.7 160,500 - HMPREF1058_RS03910 0.31 -1.4 160,516 + HMPREF1058_RS03910 0.31 -1.1 160,517 - HMPREF1058_RS03910 0.31 -2.4 160,565 - +0.1 160,669 + HMPREF1058_RS03910 0.39 -0.1 160,775 + HMPREF1058_RS03910 0.44 +0.9 160,840 + HMPREF1058_RS03910 0.47 +0.6 160,845 + HMPREF1058_RS03910 0.48 -1.5 160,858 + HMPREF1058_RS03910 0.48 -2.5
Or see this region's nucleotide sequence