Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03800 and HMPREF1058_RS03795 are separated by 198 nucleotides HMPREF1058_RS03795 and HMPREF1058_RS03790 are separated by 48 nucleotides HMPREF1058_RS03790 and HMPREF1058_RS03785 are separated by 128 nucleotides
HMPREF1058_RS03800: HMPREF1058_RS03800 - serine hydroxymethyltransferase, at 183,002 to 184,282
_RS03800
HMPREF1058_RS03795: HMPREF1058_RS03795 - MATE family efflux transporter, at 184,481 to 185,824
_RS03795
HMPREF1058_RS03790: HMPREF1058_RS03790 - OmpA family protein, at 185,873 to 186,592
_RS03790
HMPREF1058_RS03785: HMPREF1058_RS03785 - monofunctional biosynthetic peptidoglycan transglycosylase, at 186,721 to 187,443
_RS03785
Position (kb) 184
185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 183.510 kb on - strand, within HMPREF1058_RS03800 at 183.528 kb on - strand, within HMPREF1058_RS03800 at 183.536 kb on - strand, within HMPREF1058_RS03800 at 183.636 kb on - strand, within HMPREF1058_RS03800 at 183.636 kb on - strand, within HMPREF1058_RS03800 at 183.664 kb on + strand, within HMPREF1058_RS03800 at 183.786 kb on + strand, within HMPREF1058_RS03800 at 183.891 kb on + strand, within HMPREF1058_RS03800 at 183.892 kb on - strand, within HMPREF1058_RS03800 at 183.940 kb on + strand, within HMPREF1058_RS03800 at 184.219 kb on - strand at 184.280 kb on + strand at 184.300 kb on + strand at 184.303 kb on - strand at 184.309 kb on - strand at 184.387 kb on + strand at 184.387 kb on + strand at 184.577 kb on + strand at 184.577 kb on + strand at 184.579 kb on + strand at 184.579 kb on + strand at 184.580 kb on - strand at 184.580 kb on - strand at 184.655 kb on - strand, within HMPREF1058_RS03795 at 184.673 kb on - strand, within HMPREF1058_RS03795 at 184.693 kb on - strand, within HMPREF1058_RS03795 at 184.782 kb on + strand, within HMPREF1058_RS03795 at 184.817 kb on - strand, within HMPREF1058_RS03795 at 184.840 kb on + strand, within HMPREF1058_RS03795 at 184.841 kb on - strand, within HMPREF1058_RS03795 at 184.863 kb on + strand, within HMPREF1058_RS03795 at 185.011 kb on - strand, within HMPREF1058_RS03795 at 185.014 kb on - strand, within HMPREF1058_RS03795 at 185.094 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.179 kb on + strand, within HMPREF1058_RS03795 at 185.180 kb on - strand, within HMPREF1058_RS03795 at 185.388 kb on - strand, within HMPREF1058_RS03795 at 185.423 kb on + strand, within HMPREF1058_RS03795 at 185.479 kb on + strand, within HMPREF1058_RS03795 at 185.553 kb on + strand, within HMPREF1058_RS03795 at 185.558 kb on - strand, within HMPREF1058_RS03795 at 185.582 kb on - strand, within HMPREF1058_RS03795 at 185.662 kb on + strand, within HMPREF1058_RS03795 at 185.841 kb on + strand at 185.841 kb on + strand at 185.854 kb on + strand at 185.855 kb on - strand at 185.899 kb on - strand at 185.911 kb on + strand at 185.912 kb on - strand at 185.944 kb on + strand at 185.945 kb on - strand, within HMPREF1058_RS03790 at 185.948 kb on - strand, within HMPREF1058_RS03790 at 186.025 kb on + strand, within HMPREF1058_RS03790 at 186.068 kb on - strand, within HMPREF1058_RS03790 at 186.161 kb on - strand, within HMPREF1058_RS03790 at 186.181 kb on - strand, within HMPREF1058_RS03790 at 186.276 kb on + strand, within HMPREF1058_RS03790 at 186.304 kb on - strand, within HMPREF1058_RS03790 at 186.312 kb on - strand, within HMPREF1058_RS03790 at 186.320 kb on - strand, within HMPREF1058_RS03790 at 186.410 kb on - strand, within HMPREF1058_RS03790 at 186.432 kb on + strand, within HMPREF1058_RS03790 at 186.433 kb on - strand, within HMPREF1058_RS03790 at 186.465 kb on + strand, within HMPREF1058_RS03790 at 186.487 kb on + strand, within HMPREF1058_RS03790 at 186.487 kb on + strand, within HMPREF1058_RS03790 at 186.534 kb on + strand at 186.535 kb on - strand at 186.535 kb on - strand at 186.536 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.538 kb on + strand at 186.539 kb on - strand at 186.539 kb on - strand at 186.539 kb on - strand at 186.539 kb on - strand at 186.542 kb on + strand at 186.542 kb on + strand at 186.543 kb on - strand at 186.610 kb on + strand at 186.611 kb on - strand at 186.662 kb on + strand at 186.807 kb on + strand, within HMPREF1058_RS03785 at 186.807 kb on + strand, within HMPREF1058_RS03785
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 183,510 - HMPREF1058_RS03800 0.40 -1.0 183,528 - HMPREF1058_RS03800 0.41 +1.0 183,536 - HMPREF1058_RS03800 0.42 +0.9 183,636 - HMPREF1058_RS03800 0.49 -2.3 183,636 - HMPREF1058_RS03800 0.49 -1.0 183,664 + HMPREF1058_RS03800 0.52 +1.9 183,786 + HMPREF1058_RS03800 0.61 +0.5 183,891 + HMPREF1058_RS03800 0.69 +0.5 183,892 - HMPREF1058_RS03800 0.69 +0.8 183,940 + HMPREF1058_RS03800 0.73 -1.8 184,219 - -1.9 184,280 + +0.8 184,300 + -0.2 184,303 - -0.9 184,309 - -0.8 184,387 + -0.1 184,387 + +0.6 184,577 + +0.3 184,577 + -0.6 184,579 + -1.5 184,579 + +1.4 184,580 - +2.0 184,580 - -1.6 184,655 - HMPREF1058_RS03795 0.13 +0.3 184,673 - HMPREF1058_RS03795 0.14 -1.2 184,693 - HMPREF1058_RS03795 0.16 -1.5 184,782 + HMPREF1058_RS03795 0.22 +0.2 184,817 - HMPREF1058_RS03795 0.25 -1.2 184,840 + HMPREF1058_RS03795 0.27 +1.0 184,841 - HMPREF1058_RS03795 0.27 -0.4 184,863 + HMPREF1058_RS03795 0.28 -2.3 185,011 - HMPREF1058_RS03795 0.39 +0.1 185,014 - HMPREF1058_RS03795 0.40 -0.0 185,094 + HMPREF1058_RS03795 0.46 -2.8 185,179 + HMPREF1058_RS03795 0.52 -0.9 185,179 + HMPREF1058_RS03795 0.52 +0.6 185,179 + HMPREF1058_RS03795 0.52 -1.6 185,179 + HMPREF1058_RS03795 0.52 -1.7 185,180 - HMPREF1058_RS03795 0.52 +1.0 185,388 - HMPREF1058_RS03795 0.67 -1.9 185,423 + HMPREF1058_RS03795 0.70 -1.7 185,479 + HMPREF1058_RS03795 0.74 -2.9 185,553 + HMPREF1058_RS03795 0.80 -0.4 185,558 - HMPREF1058_RS03795 0.80 -2.4 185,582 - HMPREF1058_RS03795 0.82 -0.1 185,662 + HMPREF1058_RS03795 0.88 -2.0 185,841 + +0.7 185,841 + -2.4 185,854 + -1.4 185,855 - -0.4 185,899 - +1.6 185,911 + -1.8 185,912 - -0.6 185,944 + +0.6 185,945 - HMPREF1058_RS03790 0.10 -0.5 185,948 - HMPREF1058_RS03790 0.10 -1.8 186,025 + HMPREF1058_RS03790 0.21 -0.3 186,068 - HMPREF1058_RS03790 0.27 -0.8 186,161 - HMPREF1058_RS03790 0.40 +1.3 186,181 - HMPREF1058_RS03790 0.43 -1.4 186,276 + HMPREF1058_RS03790 0.56 -2.9 186,304 - HMPREF1058_RS03790 0.60 +0.2 186,312 - HMPREF1058_RS03790 0.61 +1.1 186,320 - HMPREF1058_RS03790 0.62 +1.4 186,410 - HMPREF1058_RS03790 0.75 -0.1 186,432 + HMPREF1058_RS03790 0.78 -0.3 186,433 - HMPREF1058_RS03790 0.78 +2.5 186,465 + HMPREF1058_RS03790 0.82 -0.6 186,487 + HMPREF1058_RS03790 0.85 -1.1 186,487 + HMPREF1058_RS03790 0.85 -0.8 186,534 + +0.3 186,535 - -1.7 186,535 - -1.1 186,536 + -0.8 186,538 + +2.2 186,538 + -0.4 186,538 + +2.9 186,538 + +1.4 186,538 + -0.5 186,538 + +1.0 186,539 - -0.7 186,539 - +1.3 186,539 - -1.9 186,539 - +1.6 186,542 + +0.8 186,542 + +1.1 186,543 - -1.0 186,610 + -0.6 186,611 - -1.2 186,662 + -0.7 186,807 + HMPREF1058_RS03785 0.12 -0.5 186,807 + HMPREF1058_RS03785 0.12 +0.2
Or see this region's nucleotide sequence