Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03460 and HMPREF1058_RS03455 are separated by 21 nucleotides HMPREF1058_RS03455 and HMPREF1058_RS03450 are separated by 39 nucleotides HMPREF1058_RS03450 and HMPREF1058_RS03445 are separated by 128 nucleotides
HMPREF1058_RS03460: HMPREF1058_RS03460 - Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain, at 276,384 to 277,574
_RS03460
HMPREF1058_RS03455: HMPREF1058_RS03455 - hypothetical protein, at 277,596 to 277,811
_RS03455
HMPREF1058_RS03450: HMPREF1058_RS03450 - hypothetical protein, at 277,851 to 278,297
_RS03450
HMPREF1058_RS03445: HMPREF1058_RS03445 - hypothetical protein, at 278,426 to 280,690
_RS03445
Position (kb) 277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 276.933 kb on - strand, within HMPREF1058_RS03460 at 276.983 kb on + strand, within HMPREF1058_RS03460 at 276.983 kb on + strand at 276.992 kb on + strand, within HMPREF1058_RS03460 at 277.177 kb on + strand, within HMPREF1058_RS03460 at 277.211 kb on + strand, within HMPREF1058_RS03460 at 277.211 kb on + strand, within HMPREF1058_RS03460 at 277.225 kb on + strand, within HMPREF1058_RS03460 at 277.278 kb on + strand, within HMPREF1058_RS03460 at 277.336 kb on + strand, within HMPREF1058_RS03460 at 277.379 kb on - strand, within HMPREF1058_RS03460 at 277.447 kb on - strand, within HMPREF1058_RS03460 at 277.588 kb on - strand at 277.588 kb on - strand at 277.589 kb on + strand at 277.589 kb on + strand at 277.589 kb on + strand at 277.597 kb on + strand at 277.664 kb on - strand, within HMPREF1058_RS03455 at 277.664 kb on - strand, within HMPREF1058_RS03455 at 277.682 kb on + strand, within HMPREF1058_RS03455 at 277.682 kb on + strand, within HMPREF1058_RS03455 at 277.868 kb on + strand at 277.872 kb on + strand at 277.886 kb on + strand at 277.958 kb on + strand, within HMPREF1058_RS03450 at 277.959 kb on - strand, within HMPREF1058_RS03450 at 277.985 kb on + strand, within HMPREF1058_RS03450 at 277.992 kb on - strand, within HMPREF1058_RS03450 at 278.359 kb on - strand at 278.705 kb on + strand, within HMPREF1058_RS03445 at 278.706 kb on - strand, within HMPREF1058_RS03445 at 278.749 kb on - strand, within HMPREF1058_RS03445
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 276,933 - HMPREF1058_RS03460 0.46 -0.6 276,983 + HMPREF1058_RS03460 0.50 +4.9 276,983 + +2.7 276,992 + HMPREF1058_RS03460 0.51 -3.2 277,177 + HMPREF1058_RS03460 0.67 -0.3 277,211 + HMPREF1058_RS03460 0.69 -0.1 277,211 + HMPREF1058_RS03460 0.69 +0.3 277,225 + HMPREF1058_RS03460 0.71 +2.9 277,278 + HMPREF1058_RS03460 0.75 -0.7 277,336 + HMPREF1058_RS03460 0.80 +1.6 277,379 - HMPREF1058_RS03460 0.84 +1.7 277,447 - HMPREF1058_RS03460 0.89 +1.3 277,588 - +0.4 277,588 - +1.5 277,589 + -0.1 277,589 + -1.3 277,589 + +0.3 277,597 + -0.7 277,664 - HMPREF1058_RS03455 0.31 -1.0 277,664 - HMPREF1058_RS03455 0.31 -2.0 277,682 + HMPREF1058_RS03455 0.40 -1.0 277,682 + HMPREF1058_RS03455 0.40 -0.1 277,868 + -0.4 277,872 + -1.9 277,886 + -0.4 277,958 + HMPREF1058_RS03450 0.24 +0.4 277,959 - HMPREF1058_RS03450 0.24 -1.0 277,985 + HMPREF1058_RS03450 0.30 +2.6 277,992 - HMPREF1058_RS03450 0.32 -0.4 278,359 - +1.2 278,705 + HMPREF1058_RS03445 0.12 -0.9 278,706 - HMPREF1058_RS03445 0.12 +0.3 278,749 - HMPREF1058_RS03445 0.14 +1.6
Or see this region's nucleotide sequence