Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03195 and HMPREF1058_RS03190 overlap by 4 nucleotides HMPREF1058_RS03190 and HMPREF1058_RS03185 are separated by 14 nucleotides
HMPREF1058_RS03195: HMPREF1058_RS03195 - V-type ATP synthase subunit I, at 335,063 to 336,868
_RS03195
HMPREF1058_RS03190: HMPREF1058_RS03190 - V-type ATP synthase subunit D, at 336,865 to 337,470
_RS03190
HMPREF1058_RS03185: HMPREF1058_RS03185 - V-type ATP synthase subunit B, at 337,485 to 338,807
_RS03185
Position (kb) 336
337
338 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 335.942 kb on - strand, within HMPREF1058_RS03195 at 335.958 kb on + strand, within HMPREF1058_RS03195 at 335.959 kb on - strand, within HMPREF1058_RS03195 at 335.999 kb on - strand, within HMPREF1058_RS03195 at 336.001 kb on + strand, within HMPREF1058_RS03195 at 336.013 kb on + strand, within HMPREF1058_RS03195 at 336.017 kb on + strand, within HMPREF1058_RS03195 at 336.018 kb on - strand, within HMPREF1058_RS03195 at 336.054 kb on + strand, within HMPREF1058_RS03195 at 336.179 kb on + strand, within HMPREF1058_RS03195 at 336.245 kb on + strand, within HMPREF1058_RS03195 at 336.246 kb on - strand, within HMPREF1058_RS03195 at 336.250 kb on + strand, within HMPREF1058_RS03195 at 336.250 kb on + strand, within HMPREF1058_RS03195 at 336.305 kb on - strand, within HMPREF1058_RS03195 at 336.305 kb on - strand, within HMPREF1058_RS03195 at 336.423 kb on + strand, within HMPREF1058_RS03195 at 336.643 kb on + strand, within HMPREF1058_RS03195 at 336.673 kb on + strand, within HMPREF1058_RS03195 at 336.694 kb on + strand at 336.820 kb on - strand at 336.959 kb on - strand, within HMPREF1058_RS03190 at 337.033 kb on - strand, within HMPREF1058_RS03190 at 337.068 kb on + strand, within HMPREF1058_RS03190 at 337.069 kb on - strand, within HMPREF1058_RS03190 at 337.112 kb on + strand, within HMPREF1058_RS03190 at 337.112 kb on + strand, within HMPREF1058_RS03190 at 337.113 kb on - strand, within HMPREF1058_RS03190 at 337.113 kb on - strand, within HMPREF1058_RS03190 at 337.114 kb on + strand, within HMPREF1058_RS03190 at 337.115 kb on - strand, within HMPREF1058_RS03190 at 337.384 kb on - strand, within HMPREF1058_RS03190 at 337.390 kb on - strand, within HMPREF1058_RS03190 at 337.449 kb on + strand at 337.482 kb on - strand at 337.653 kb on - strand, within HMPREF1058_RS03185 at 337.694 kb on + strand, within HMPREF1058_RS03185 at 337.695 kb on - strand, within HMPREF1058_RS03185 at 337.721 kb on - strand, within HMPREF1058_RS03185 at 337.773 kb on - strand, within HMPREF1058_RS03185 at 337.875 kb on - strand, within HMPREF1058_RS03185 at 337.877 kb on - strand, within HMPREF1058_RS03185 at 337.908 kb on - strand, within HMPREF1058_RS03185 at 337.926 kb on - strand, within HMPREF1058_RS03185 at 337.926 kb on - strand, within HMPREF1058_RS03185 at 338.018 kb on + strand, within HMPREF1058_RS03185 at 338.060 kb on + strand, within HMPREF1058_RS03185 at 338.061 kb on - strand, within HMPREF1058_RS03185 at 338.078 kb on - strand, within HMPREF1058_RS03185 at 338.078 kb on - strand, within HMPREF1058_RS03185 at 338.087 kb on + strand, within HMPREF1058_RS03185 at 338.106 kb on + strand, within HMPREF1058_RS03185 at 338.117 kb on + strand, within HMPREF1058_RS03185 at 338.179 kb on - strand, within HMPREF1058_RS03185 at 338.198 kb on + strand, within HMPREF1058_RS03185 at 338.216 kb on + strand, within HMPREF1058_RS03185 at 338.244 kb on + strand, within HMPREF1058_RS03185 at 338.245 kb on - strand, within HMPREF1058_RS03185 at 338.257 kb on + strand, within HMPREF1058_RS03185 at 338.263 kb on + strand, within HMPREF1058_RS03185 at 338.399 kb on + strand, within HMPREF1058_RS03185 at 338.399 kb on + strand, within HMPREF1058_RS03185 at 338.400 kb on - strand, within HMPREF1058_RS03185 at 338.400 kb on - strand, within HMPREF1058_RS03185
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 335,942 - HMPREF1058_RS03195 0.49 +0.6 335,958 + HMPREF1058_RS03195 0.50 +0.2 335,959 - HMPREF1058_RS03195 0.50 -1.5 335,999 - HMPREF1058_RS03195 0.52 -0.7 336,001 + HMPREF1058_RS03195 0.52 +1.9 336,013 + HMPREF1058_RS03195 0.53 -0.6 336,017 + HMPREF1058_RS03195 0.53 +1.9 336,018 - HMPREF1058_RS03195 0.53 -0.6 336,054 + HMPREF1058_RS03195 0.55 -0.9 336,179 + HMPREF1058_RS03195 0.62 -1.0 336,245 + HMPREF1058_RS03195 0.65 -0.1 336,246 - HMPREF1058_RS03195 0.66 +1.6 336,250 + HMPREF1058_RS03195 0.66 +1.9 336,250 + HMPREF1058_RS03195 0.66 +1.1 336,305 - HMPREF1058_RS03195 0.69 +0.8 336,305 - HMPREF1058_RS03195 0.69 +1.1 336,423 + HMPREF1058_RS03195 0.75 +0.9 336,643 + HMPREF1058_RS03195 0.87 -1.4 336,673 + HMPREF1058_RS03195 0.89 +1.1 336,694 + +0.4 336,820 - -3.0 336,959 - HMPREF1058_RS03190 0.16 -1.9 337,033 - HMPREF1058_RS03190 0.28 -0.3 337,068 + HMPREF1058_RS03190 0.33 -0.3 337,069 - HMPREF1058_RS03190 0.34 -1.7 337,112 + HMPREF1058_RS03190 0.41 +0.1 337,112 + HMPREF1058_RS03190 0.41 -1.0 337,113 - HMPREF1058_RS03190 0.41 -1.8 337,113 - HMPREF1058_RS03190 0.41 -0.5 337,114 + HMPREF1058_RS03190 0.41 -0.1 337,115 - HMPREF1058_RS03190 0.41 -1.5 337,384 - HMPREF1058_RS03190 0.86 -1.0 337,390 - HMPREF1058_RS03190 0.87 -0.3 337,449 + -0.3 337,482 - -1.9 337,653 - HMPREF1058_RS03185 0.13 +0.8 337,694 + HMPREF1058_RS03185 0.16 -1.0 337,695 - HMPREF1058_RS03185 0.16 -0.2 337,721 - HMPREF1058_RS03185 0.18 -0.1 337,773 - HMPREF1058_RS03185 0.22 -3.6 337,875 - HMPREF1058_RS03185 0.29 +1.6 337,877 - HMPREF1058_RS03185 0.30 +0.1 337,908 - HMPREF1058_RS03185 0.32 +0.0 337,926 - HMPREF1058_RS03185 0.33 +0.2 337,926 - HMPREF1058_RS03185 0.33 -0.3 338,018 + HMPREF1058_RS03185 0.40 +0.1 338,060 + HMPREF1058_RS03185 0.43 -1.6 338,061 - HMPREF1058_RS03185 0.44 -0.7 338,078 - HMPREF1058_RS03185 0.45 -2.7 338,078 - HMPREF1058_RS03185 0.45 -1.2 338,087 + HMPREF1058_RS03185 0.46 +2.9 338,106 + HMPREF1058_RS03185 0.47 +0.3 338,117 + HMPREF1058_RS03185 0.48 -2.6 338,179 - HMPREF1058_RS03185 0.52 +1.4 338,198 + HMPREF1058_RS03185 0.54 -1.5 338,216 + HMPREF1058_RS03185 0.55 -0.6 338,244 + HMPREF1058_RS03185 0.57 -1.0 338,245 - HMPREF1058_RS03185 0.57 +0.3 338,257 + HMPREF1058_RS03185 0.58 +2.1 338,263 + HMPREF1058_RS03185 0.59 -1.5 338,399 + HMPREF1058_RS03185 0.69 -0.5 338,399 + HMPREF1058_RS03185 0.69 -1.6 338,400 - HMPREF1058_RS03185 0.69 +1.0 338,400 - HMPREF1058_RS03185 0.69 -1.9
Or see this region's nucleotide sequence