Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01975 and HMPREF1058_RS01970 are separated by 148 nucleotides HMPREF1058_RS01970 and HMPREF1058_RS21540 are separated by 42 nucleotides HMPREF1058_RS21540 and HMPREF1058_RS01965 are separated by 51 nucleotides HMPREF1058_RS01965 and HMPREF1058_RS01960 are separated by 12 nucleotides HMPREF1058_RS01960 and HMPREF1058_RS21170 are separated by 3 nucleotides HMPREF1058_RS21170 and HMPREF1058_RS01955 are separated by 105 nucleotides HMPREF1058_RS01955 and HMPREF1058_RS01950 are separated by 209 nucleotides
HMPREF1058_RS01975: HMPREF1058_RS01975 - hypothetical protein, at 5,067 to 5,333
_RS01975
HMPREF1058_RS01970: HMPREF1058_RS01970 - hypothetical protein, at 5,482 to 5,661
_RS01970
HMPREF1058_RS21540: HMPREF1058_RS21540 - hypothetical protein, at 5,704 to 5,856
_RS21540
HMPREF1058_RS01965: HMPREF1058_RS01965 - hypothetical protein, at 5,908 to 6,105
_RS01965
HMPREF1058_RS01960: HMPREF1058_RS01960 - hypothetical protein, at 6,118 to 6,405
_RS01960
HMPREF1058_RS21170: HMPREF1058_RS21170 - DUF3873 family protein, at 6,409 to 6,615
_RS21170
HMPREF1058_RS01955: HMPREF1058_RS01955 - hypothetical protein, at 6,721 to 7,173
_RS01955
HMPREF1058_RS01950: HMPREF1058_RS01950 - phosphoadenosine phosphosulfate reductase family protein, at 7,383 to 8,072
_RS01950
Position (kb) 6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5.245 kb on + strand, within HMPREF1058_RS01975 at 5.246 kb on - strand, within HMPREF1058_RS01975 at 5.246 kb on - strand, within HMPREF1058_RS01975 at 5.305 kb on - strand, within HMPREF1058_RS01975 at 5.305 kb on - strand, within HMPREF1058_RS01975 at 5.349 kb on - strand at 5.459 kb on + strand at 5.460 kb on - strand at 5.476 kb on - strand at 5.528 kb on + strand, within HMPREF1058_RS01970 at 5.529 kb on - strand, within HMPREF1058_RS01970 at 5.531 kb on + strand, within HMPREF1058_RS01970 at 5.573 kb on + strand, within HMPREF1058_RS01970 at 5.573 kb on + strand, within HMPREF1058_RS01970 at 5.596 kb on + strand, within HMPREF1058_RS01970 at 5.625 kb on + strand, within HMPREF1058_RS01970 at 5.695 kb on + strand at 5.696 kb on - strand at 5.696 kb on - strand at 5.898 kb on - strand at 5.898 kb on - strand at 6.109 kb on + strand at 6.179 kb on + strand, within HMPREF1058_RS01960 at 6.179 kb on + strand, within HMPREF1058_RS01960 at 6.180 kb on - strand, within HMPREF1058_RS01960 at 6.181 kb on + strand, within HMPREF1058_RS01960 at 6.181 kb on + strand, within HMPREF1058_RS01960 at 6.181 kb on + strand, within HMPREF1058_RS01960 at 6.306 kb on + strand, within HMPREF1058_RS01960 at 6.306 kb on + strand, within HMPREF1058_RS01960 at 6.307 kb on - strand, within HMPREF1058_RS01960 at 6.440 kb on + strand, within HMPREF1058_RS21170 at 6.463 kb on + strand, within HMPREF1058_RS21170 at 6.463 kb on + strand, within HMPREF1058_RS21170 at 6.463 kb on + strand, within HMPREF1058_RS21170 at 6.508 kb on + strand, within HMPREF1058_RS21170 at 6.508 kb on + strand, within HMPREF1058_RS21170 at 6.562 kb on - strand, within HMPREF1058_RS21170 at 6.600 kb on + strand at 6.630 kb on - strand at 6.668 kb on - strand at 6.691 kb on + strand at 6.733 kb on + strand at 6.750 kb on - strand at 6.750 kb on - strand at 6.825 kb on + strand, within HMPREF1058_RS01955 at 6.825 kb on + strand, within HMPREF1058_RS01955 at 6.826 kb on - strand, within HMPREF1058_RS01955 at 6.924 kb on + strand, within HMPREF1058_RS01955 at 6.942 kb on - strand, within HMPREF1058_RS01955 at 6.949 kb on - strand, within HMPREF1058_RS01955 at 6.958 kb on + strand, within HMPREF1058_RS01955 at 6.959 kb on - strand, within HMPREF1058_RS01955 at 6.963 kb on + strand, within HMPREF1058_RS01955 at 7.133 kb on + strand at 7.133 kb on + strand at 7.134 kb on - strand at 7.206 kb on - strand at 7.219 kb on - strand at 7.272 kb on + strand at 7.294 kb on + strand at 7.295 kb on - strand at 7.317 kb on + strand at 7.362 kb on - strand at 7.396 kb on + strand at 7.400 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 5,245 + HMPREF1058_RS01975 0.67 +0.7 5,246 - HMPREF1058_RS01975 0.67 -0.0 5,246 - HMPREF1058_RS01975 0.67 -0.0 5,305 - HMPREF1058_RS01975 0.89 +1.4 5,305 - HMPREF1058_RS01975 0.89 +0.7 5,349 - -3.4 5,459 + +0.1 5,460 - +0.1 5,476 - -0.1 5,528 + HMPREF1058_RS01970 0.26 -1.0 5,529 - HMPREF1058_RS01970 0.26 +1.2 5,531 + HMPREF1058_RS01970 0.27 -0.0 5,573 + HMPREF1058_RS01970 0.51 -3.3 5,573 + HMPREF1058_RS01970 0.51 -2.3 5,596 + HMPREF1058_RS01970 0.63 -2.0 5,625 + HMPREF1058_RS01970 0.79 -0.8 5,695 + +0.8 5,696 - +1.8 5,696 - -0.5 5,898 - +1.1 5,898 - +1.4 6,109 + +0.1 6,179 + HMPREF1058_RS01960 0.21 -1.2 6,179 + HMPREF1058_RS01960 0.21 -1.3 6,180 - HMPREF1058_RS01960 0.22 -0.5 6,181 + HMPREF1058_RS01960 0.22 -0.9 6,181 + HMPREF1058_RS01960 0.22 -0.5 6,181 + HMPREF1058_RS01960 0.22 -1.0 6,306 + HMPREF1058_RS01960 0.65 +0.5 6,306 + HMPREF1058_RS01960 0.65 -0.6 6,307 - HMPREF1058_RS01960 0.66 -1.2 6,440 + HMPREF1058_RS21170 0.15 -0.0 6,463 + HMPREF1058_RS21170 0.26 +0.9 6,463 + HMPREF1058_RS21170 0.26 +0.0 6,463 + HMPREF1058_RS21170 0.26 +1.4 6,508 + HMPREF1058_RS21170 0.48 -0.5 6,508 + HMPREF1058_RS21170 0.48 +1.0 6,562 - HMPREF1058_RS21170 0.74 -0.4 6,600 + +1.2 6,630 - -1.9 6,668 - -1.1 6,691 + +2.2 6,733 + -0.2 6,750 - -1.9 6,750 - -0.9 6,825 + HMPREF1058_RS01955 0.23 +0.1 6,825 + HMPREF1058_RS01955 0.23 +0.7 6,826 - HMPREF1058_RS01955 0.23 -1.6 6,924 + HMPREF1058_RS01955 0.45 -0.9 6,942 - HMPREF1058_RS01955 0.49 +0.6 6,949 - HMPREF1058_RS01955 0.50 -0.1 6,958 + HMPREF1058_RS01955 0.52 +1.0 6,959 - HMPREF1058_RS01955 0.53 -0.9 6,963 + HMPREF1058_RS01955 0.53 +0.0 7,133 + +1.6 7,133 + -0.8 7,134 - +0.3 7,206 - -1.4 7,219 - +0.3 7,272 + +0.5 7,294 + +2.0 7,295 - +0.2 7,317 + -0.8 7,362 - +0.0 7,396 + -0.1 7,400 + -1.1
Or see this region's nucleotide sequence