Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21375 and HMPREF1058_RS01885 overlap by 4 nucleotides HMPREF1058_RS01885 and HMPREF1058_RS01880 are separated by 4 nucleotides HMPREF1058_RS01880 and HMPREF1058_RS01875 are separated by 259 nucleotides HMPREF1058_RS01875 and HMPREF1058_RS21185 overlap by 88 nucleotides HMPREF1058_RS21185 and HMPREF1058_RS01870 are separated by 2 nucleotides
HMPREF1058_RS21375: HMPREF1058_RS21375 - DUF2829 domain-containing protein, at 17,490 to 18,203
_RS21375
HMPREF1058_RS01885: HMPREF1058_RS01885 - hypothetical protein, at 18,200 to 18,595
_RS01885
HMPREF1058_RS01880: HMPREF1058_RS01880 - hypothetical protein, at 18,600 to 19,154
_RS01880
HMPREF1058_RS01875: HMPREF1058_RS01875 - hypothetical protein, at 19,414 to 19,800
_RS01875
HMPREF1058_RS21185: HMPREF1058_RS21185 - hypothetical protein, at 19,713 to 19,994
_RS21185
HMPREF1058_RS01870: HMPREF1058_RS01870 - tape measure protein, at 19,997 to 24,631
_RS01870
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 17.622 kb on - strand, within HMPREF1058_RS21375 at 17.626 kb on - strand, within HMPREF1058_RS21375 at 17.691 kb on - strand, within HMPREF1058_RS21375 at 17.714 kb on - strand, within HMPREF1058_RS21375 at 17.743 kb on + strand, within HMPREF1058_RS21375 at 17.795 kb on + strand, within HMPREF1058_RS21375 at 17.796 kb on - strand, within HMPREF1058_RS21375 at 17.800 kb on - strand, within HMPREF1058_RS21375 at 17.831 kb on + strand, within HMPREF1058_RS21375 at 17.845 kb on - strand, within HMPREF1058_RS21375 at 17.846 kb on + strand, within HMPREF1058_RS21375 at 17.849 kb on - strand, within HMPREF1058_RS21375 at 17.849 kb on - strand, within HMPREF1058_RS21375 at 17.877 kb on - strand, within HMPREF1058_RS21375 at 17.902 kb on + strand, within HMPREF1058_RS21375 at 17.906 kb on - strand, within HMPREF1058_RS21375 at 17.906 kb on - strand, within HMPREF1058_RS21375 at 17.928 kb on - strand, within HMPREF1058_RS21375 at 17.928 kb on - strand, within HMPREF1058_RS21375 at 17.928 kb on - strand, within HMPREF1058_RS21375 at 17.960 kb on + strand, within HMPREF1058_RS21375 at 18.117 kb on - strand, within HMPREF1058_RS21375 at 18.121 kb on - strand, within HMPREF1058_RS21375 at 18.173 kb on - strand at 18.220 kb on - strand at 18.258 kb on + strand, within HMPREF1058_RS01885 at 18.379 kb on - strand, within HMPREF1058_RS01885 at 18.466 kb on - strand, within HMPREF1058_RS01885 at 18.466 kb on - strand, within HMPREF1058_RS01885 at 18.468 kb on + strand, within HMPREF1058_RS01885 at 18.469 kb on - strand at 18.469 kb on - strand, within HMPREF1058_RS01885 at 18.484 kb on + strand, within HMPREF1058_RS01885 at 18.492 kb on - strand, within HMPREF1058_RS01885 at 18.548 kb on + strand, within HMPREF1058_RS01885 at 18.567 kb on + strand at 18.594 kb on - strand at 18.599 kb on + strand at 18.862 kb on - strand, within HMPREF1058_RS01880 at 18.862 kb on - strand, within HMPREF1058_RS01880 at 18.954 kb on - strand, within HMPREF1058_RS01880 at 19.113 kb on + strand at 19.115 kb on + strand at 19.116 kb on - strand at 19.116 kb on - strand at 19.172 kb on - strand at 19.255 kb on - strand at 19.342 kb on + strand at 19.383 kb on + strand at 19.385 kb on + strand at 19.385 kb on + strand at 19.386 kb on - strand at 19.386 kb on - strand at 19.386 kb on - strand at 19.387 kb on + strand at 19.388 kb on - strand at 19.388 kb on - strand at 19.478 kb on + strand, within HMPREF1058_RS01875 at 19.492 kb on + strand, within HMPREF1058_RS01875 at 19.493 kb on - strand, within HMPREF1058_RS01875 at 19.495 kb on - strand, within HMPREF1058_RS01875 at 19.521 kb on + strand, within HMPREF1058_RS01875 at 19.584 kb on + strand, within HMPREF1058_RS01875 at 19.585 kb on - strand, within HMPREF1058_RS01875 at 19.585 kb on - strand, within HMPREF1058_RS01875 at 19.825 kb on + strand, within HMPREF1058_RS21185 at 19.857 kb on + strand, within HMPREF1058_RS21185 at 19.860 kb on - strand, within HMPREF1058_RS21185 at 19.860 kb on - strand, within HMPREF1058_RS21185 at 19.927 kb on + strand, within HMPREF1058_RS21185 at 19.928 kb on - strand, within HMPREF1058_RS21185 at 19.950 kb on - strand, within HMPREF1058_RS21185 at 19.992 kb on + strand at 20.009 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 17,622 - HMPREF1058_RS21375 0.18 -0.1 17,626 - HMPREF1058_RS21375 0.19 -0.0 17,691 - HMPREF1058_RS21375 0.28 -2.2 17,714 - HMPREF1058_RS21375 0.31 -2.9 17,743 + HMPREF1058_RS21375 0.35 -1.8 17,795 + HMPREF1058_RS21375 0.43 -0.3 17,796 - HMPREF1058_RS21375 0.43 +0.5 17,800 - HMPREF1058_RS21375 0.43 +0.3 17,831 + HMPREF1058_RS21375 0.48 -2.1 17,845 - HMPREF1058_RS21375 0.50 -0.7 17,846 + HMPREF1058_RS21375 0.50 -1.3 17,849 - HMPREF1058_RS21375 0.50 +1.3 17,849 - HMPREF1058_RS21375 0.50 -1.7 17,877 - HMPREF1058_RS21375 0.54 -0.3 17,902 + HMPREF1058_RS21375 0.58 -0.2 17,906 - HMPREF1058_RS21375 0.58 +0.2 17,906 - HMPREF1058_RS21375 0.58 +0.7 17,928 - HMPREF1058_RS21375 0.61 +2.7 17,928 - HMPREF1058_RS21375 0.61 -0.7 17,928 - HMPREF1058_RS21375 0.61 -0.2 17,960 + HMPREF1058_RS21375 0.66 +2.3 18,117 - HMPREF1058_RS21375 0.88 -0.3 18,121 - HMPREF1058_RS21375 0.88 +0.3 18,173 - +0.3 18,220 - -0.1 18,258 + HMPREF1058_RS01885 0.15 +2.1 18,379 - HMPREF1058_RS01885 0.45 +0.4 18,466 - HMPREF1058_RS01885 0.67 -1.3 18,466 - HMPREF1058_RS01885 0.67 -0.0 18,468 + HMPREF1058_RS01885 0.68 -2.7 18,469 - -0.0 18,469 - HMPREF1058_RS01885 0.68 -3.2 18,484 + HMPREF1058_RS01885 0.72 +1.1 18,492 - HMPREF1058_RS01885 0.74 -0.4 18,548 + HMPREF1058_RS01885 0.88 +2.7 18,567 + -1.0 18,594 - -1.5 18,599 + -2.6 18,862 - HMPREF1058_RS01880 0.47 +0.4 18,862 - HMPREF1058_RS01880 0.47 -1.8 18,954 - HMPREF1058_RS01880 0.64 -3.6 19,113 + -0.2 19,115 + +2.0 19,116 - +0.2 19,116 - -1.9 19,172 - -2.3 19,255 - +1.0 19,342 + -1.1 19,383 + +0.5 19,385 + -0.7 19,385 + -2.1 19,386 - -0.3 19,386 - -1.8 19,386 - -1.2 19,387 + +1.0 19,388 - -0.1 19,388 - +1.2 19,478 + HMPREF1058_RS01875 0.17 -0.2 19,492 + HMPREF1058_RS01875 0.20 -0.1 19,493 - HMPREF1058_RS01875 0.20 -0.6 19,495 - HMPREF1058_RS01875 0.21 -2.1 19,521 + HMPREF1058_RS01875 0.28 +2.3 19,584 + HMPREF1058_RS01875 0.44 -2.1 19,585 - HMPREF1058_RS01875 0.44 +3.0 19,585 - HMPREF1058_RS01875 0.44 +1.7 19,825 + HMPREF1058_RS21185 0.40 +2.0 19,857 + HMPREF1058_RS21185 0.51 +1.4 19,860 - HMPREF1058_RS21185 0.52 -1.8 19,860 - HMPREF1058_RS21185 0.52 -1.0 19,927 + HMPREF1058_RS21185 0.76 -1.4 19,928 - HMPREF1058_RS21185 0.76 -1.3 19,950 - HMPREF1058_RS21185 0.84 -0.3 19,992 + -1.0 20,009 + -1.3
Or see this region's nucleotide sequence