Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21545 and HMPREF1058_RS21715 overlap by 1 nucleotides HMPREF1058_RS21715 and HMPREF1058_RS01820 are separated by 296 nucleotides HMPREF1058_RS01820 and HMPREF1058_RS01815 are separated by 12 nucleotides
HMPREF1058_RS21545: HMPREF1058_RS21545 - hypothetical protein, at 35,477 to 35,635
_RS21545
HMPREF1058_RS21715: HMPREF1058_RS21715 - hypothetical protein, at 35,635 to 36,171
_RS21715
HMPREF1058_RS01820: HMPREF1058_RS01820 - hypothetical protein, at 36,468 to 36,710
_RS01820
HMPREF1058_RS01815: HMPREF1058_RS01815 - phage integrase SAM-like domain-containing protein, at 36,723 to 37,964
_RS01815
Position (kb) 36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.470 kb on + strand at 35.593 kb on + strand, within HMPREF1058_RS21545 at 35.593 kb on + strand, within HMPREF1058_RS21545 at 35.644 kb on + strand at 35.644 kb on + strand at 35.645 kb on - strand at 35.645 kb on - strand at 35.646 kb on + strand at 35.646 kb on + strand at 35.647 kb on - strand at 35.649 kb on + strand at 35.650 kb on - strand at 35.650 kb on - strand at 35.677 kb on - strand at 35.760 kb on - strand, within HMPREF1058_RS21715 at 35.799 kb on - strand, within HMPREF1058_RS21715 at 35.848 kb on + strand, within HMPREF1058_RS21715 at 35.848 kb on + strand, within HMPREF1058_RS21715 at 35.849 kb on - strand at 35.852 kb on + strand, within HMPREF1058_RS21715 at 35.852 kb on + strand, within HMPREF1058_RS21715 at 35.869 kb on + strand, within HMPREF1058_RS21715 at 35.870 kb on - strand, within HMPREF1058_RS21715 at 35.940 kb on + strand, within HMPREF1058_RS21715 at 36.128 kb on + strand at 36.128 kb on + strand at 36.129 kb on - strand at 36.169 kb on + strand at 36.183 kb on + strand at 36.341 kb on + strand at 36.371 kb on - strand at 36.391 kb on - strand at 36.446 kb on + strand at 36.464 kb on + strand at 36.465 kb on - strand at 36.487 kb on - strand at 36.517 kb on + strand, within HMPREF1058_RS01820 at 36.642 kb on + strand, within HMPREF1058_RS01820 at 36.643 kb on - strand, within HMPREF1058_RS01820 at 36.768 kb on - strand at 36.783 kb on - strand at 36.804 kb on + strand at 36.808 kb on + strand at 36.809 kb on - strand at 36.810 kb on + strand at 36.864 kb on - strand, within HMPREF1058_RS01815 at 36.973 kb on - strand, within HMPREF1058_RS01815 at 37.017 kb on - strand, within HMPREF1058_RS01815 at 37.018 kb on + strand, within HMPREF1058_RS01815 at 37.054 kb on + strand, within HMPREF1058_RS01815 at 37.064 kb on - strand, within HMPREF1058_RS01815 at 37.064 kb on - strand, within HMPREF1058_RS01815 at 37.066 kb on - strand, within HMPREF1058_RS01815 at 37.099 kb on - strand, within HMPREF1058_RS01815 at 37.144 kb on + strand, within HMPREF1058_RS01815 at 37.144 kb on + strand, within HMPREF1058_RS01815 at 37.177 kb on - strand, within HMPREF1058_RS01815 at 37.177 kb on - strand, within HMPREF1058_RS01815 at 37.233 kb on + strand, within HMPREF1058_RS01815 at 37.234 kb on - strand, within HMPREF1058_RS01815 at 37.235 kb on + strand, within HMPREF1058_RS01815 at 37.235 kb on + strand, within HMPREF1058_RS01815 at 37.235 kb on + strand, within HMPREF1058_RS01815 at 37.235 kb on + strand, within HMPREF1058_RS01815 at 37.242 kb on - strand, within HMPREF1058_RS01815 at 37.242 kb on - strand, within HMPREF1058_RS01815 at 37.242 kb on - strand, within HMPREF1058_RS01815 at 37.296 kb on - strand, within HMPREF1058_RS01815 at 37.296 kb on - strand, within HMPREF1058_RS01815 at 37.297 kb on + strand, within HMPREF1058_RS01815 at 37.297 kb on + strand, within HMPREF1058_RS01815 at 37.309 kb on + strand, within HMPREF1058_RS01815 at 37.309 kb on + strand, within HMPREF1058_RS01815 at 37.310 kb on - strand, within HMPREF1058_RS01815 at 37.311 kb on + strand, within HMPREF1058_RS01815 at 37.325 kb on + strand, within HMPREF1058_RS01815 at 37.326 kb on - strand, within HMPREF1058_RS01815 at 37.326 kb on - strand, within HMPREF1058_RS01815 at 37.326 kb on - strand, within HMPREF1058_RS01815 at 37.353 kb on - strand, within HMPREF1058_RS01815 at 37.356 kb on + strand, within HMPREF1058_RS01815 at 37.357 kb on - strand, within HMPREF1058_RS01815 at 37.359 kb on + strand, within HMPREF1058_RS01815 at 37.359 kb on + strand, within HMPREF1058_RS01815 at 37.360 kb on - strand, within HMPREF1058_RS01815 at 37.362 kb on - strand, within HMPREF1058_RS01815 at 37.362 kb on - strand, within HMPREF1058_RS01815 at 37.365 kb on - strand, within HMPREF1058_RS01815 at 37.365 kb on - strand, within HMPREF1058_RS01815 at 37.370 kb on + strand, within HMPREF1058_RS01815 at 37.371 kb on - strand, within HMPREF1058_RS01815 at 37.375 kb on + strand, within HMPREF1058_RS01815 at 37.399 kb on - strand, within HMPREF1058_RS01815 at 37.399 kb on - strand, within HMPREF1058_RS01815 at 37.405 kb on - strand, within HMPREF1058_RS01815 at 37.428 kb on - strand, within HMPREF1058_RS01815 at 37.430 kb on - strand, within HMPREF1058_RS01815 at 37.474 kb on + strand, within HMPREF1058_RS01815 at 37.525 kb on - strand, within HMPREF1058_RS01815 at 37.588 kb on - strand, within HMPREF1058_RS01815 at 37.636 kb on - strand, within HMPREF1058_RS01815 at 37.665 kb on + strand, within HMPREF1058_RS01815 at 37.697 kb on + strand, within HMPREF1058_RS01815 at 37.697 kb on + strand, within HMPREF1058_RS01815 at 37.697 kb on + strand, within HMPREF1058_RS01815 at 37.697 kb on + strand, within HMPREF1058_RS01815 at 37.698 kb on - strand, within HMPREF1058_RS01815 at 37.698 kb on - strand, within HMPREF1058_RS01815
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 35,470 + +2.6 35,593 + HMPREF1058_RS21545 0.73 +0.8 35,593 + HMPREF1058_RS21545 0.73 -1.8 35,644 + -0.4 35,644 + +0.8 35,645 - +2.6 35,645 - +2.0 35,646 + +1.6 35,646 + +0.4 35,647 - +0.1 35,649 + -0.4 35,650 - +0.5 35,650 - +1.2 35,677 - -0.9 35,760 - HMPREF1058_RS21715 0.23 -0.0 35,799 - HMPREF1058_RS21715 0.31 -0.9 35,848 + HMPREF1058_RS21715 0.40 -1.7 35,848 + HMPREF1058_RS21715 0.40 -1.6 35,849 - +0.4 35,852 + HMPREF1058_RS21715 0.40 +0.4 35,852 + HMPREF1058_RS21715 0.40 -1.1 35,869 + HMPREF1058_RS21715 0.44 +1.0 35,870 - HMPREF1058_RS21715 0.44 +0.8 35,940 + HMPREF1058_RS21715 0.57 +0.9 36,128 + -1.0 36,128 + -0.9 36,129 - +0.9 36,169 + -0.9 36,183 + +1.0 36,341 + -0.8 36,371 - +1.4 36,391 - -0.4 36,446 + -0.7 36,464 + -0.2 36,465 - +1.4 36,487 - -2.2 36,517 + HMPREF1058_RS01820 0.20 -0.8 36,642 + HMPREF1058_RS01820 0.72 -0.9 36,643 - HMPREF1058_RS01820 0.72 -1.7 36,768 - -0.9 36,783 - +0.2 36,804 + +1.4 36,808 + -0.0 36,809 - -0.0 36,810 + -1.0 36,864 - HMPREF1058_RS01815 0.11 +0.3 36,973 - HMPREF1058_RS01815 0.20 -0.2 37,017 - HMPREF1058_RS01815 0.24 +1.2 37,018 + HMPREF1058_RS01815 0.24 +1.1 37,054 + HMPREF1058_RS01815 0.27 -0.4 37,064 - HMPREF1058_RS01815 0.27 +0.3 37,064 - HMPREF1058_RS01815 0.27 +0.1 37,066 - HMPREF1058_RS01815 0.28 -2.2 37,099 - HMPREF1058_RS01815 0.30 -0.7 37,144 + HMPREF1058_RS01815 0.34 -2.1 37,144 + HMPREF1058_RS01815 0.34 -0.7 37,177 - HMPREF1058_RS01815 0.37 -0.4 37,177 - HMPREF1058_RS01815 0.37 -0.3 37,233 + HMPREF1058_RS01815 0.41 -1.1 37,234 - HMPREF1058_RS01815 0.41 -3.5 37,235 + HMPREF1058_RS01815 0.41 -0.6 37,235 + HMPREF1058_RS01815 0.41 -0.3 37,235 + HMPREF1058_RS01815 0.41 -2.1 37,235 + HMPREF1058_RS01815 0.41 -0.3 37,242 - HMPREF1058_RS01815 0.42 +0.3 37,242 - HMPREF1058_RS01815 0.42 +1.6 37,242 - HMPREF1058_RS01815 0.42 -0.2 37,296 - HMPREF1058_RS01815 0.46 +0.8 37,296 - HMPREF1058_RS01815 0.46 -0.2 37,297 + HMPREF1058_RS01815 0.46 -0.8 37,297 + HMPREF1058_RS01815 0.46 -0.0 37,309 + HMPREF1058_RS01815 0.47 +0.2 37,309 + HMPREF1058_RS01815 0.47 +0.9 37,310 - HMPREF1058_RS01815 0.47 +1.2 37,311 + HMPREF1058_RS01815 0.47 -0.5 37,325 + HMPREF1058_RS01815 0.48 +1.2 37,326 - HMPREF1058_RS01815 0.49 -3.1 37,326 - HMPREF1058_RS01815 0.49 +0.5 37,326 - HMPREF1058_RS01815 0.49 -0.2 37,353 - HMPREF1058_RS01815 0.51 +0.8 37,356 + HMPREF1058_RS01815 0.51 -0.6 37,357 - HMPREF1058_RS01815 0.51 -2.1 37,359 + HMPREF1058_RS01815 0.51 +0.5 37,359 + HMPREF1058_RS01815 0.51 +2.0 37,360 - HMPREF1058_RS01815 0.51 +2.2 37,362 - HMPREF1058_RS01815 0.51 +2.1 37,362 - HMPREF1058_RS01815 0.51 -1.6 37,365 - HMPREF1058_RS01815 0.52 +0.2 37,365 - HMPREF1058_RS01815 0.52 -1.0 37,370 + HMPREF1058_RS01815 0.52 -0.6 37,371 - HMPREF1058_RS01815 0.52 +0.5 37,375 + HMPREF1058_RS01815 0.52 +1.4 37,399 - HMPREF1058_RS01815 0.54 +0.7 37,399 - HMPREF1058_RS01815 0.54 +0.7 37,405 - HMPREF1058_RS01815 0.55 +1.5 37,428 - HMPREF1058_RS01815 0.57 -1.0 37,430 - HMPREF1058_RS01815 0.57 -2.7 37,474 + HMPREF1058_RS01815 0.60 -1.5 37,525 - HMPREF1058_RS01815 0.65 +1.0 37,588 - HMPREF1058_RS01815 0.70 +0.8 37,636 - HMPREF1058_RS01815 0.74 +0.7 37,665 + HMPREF1058_RS01815 0.76 +0.7 37,697 + HMPREF1058_RS01815 0.78 +1.4 37,697 + HMPREF1058_RS01815 0.78 -0.7 37,697 + HMPREF1058_RS01815 0.78 -1.9 37,697 + HMPREF1058_RS01815 0.78 +0.5 37,698 - HMPREF1058_RS01815 0.79 +0.7 37,698 - HMPREF1058_RS01815 0.79 +1.0
Or see this region's nucleotide sequence