Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01755 and HMPREF1058_RS01750 are separated by 249 nucleotides HMPREF1058_RS01750 and HMPREF1058_RS01745 are separated by 83 nucleotides HMPREF1058_RS01745 and HMPREF1058_RS01740 overlap by 1 nucleotides
HMPREF1058_RS01755: HMPREF1058_RS01755 - DNA-directed RNA polymerase subunit omega, at 50,317 to 50,652
_RS01755
HMPREF1058_RS01750: HMPREF1058_RS01750 - DUF4293 domain-containing protein, at 50,902 to 51,354
_RS01750
HMPREF1058_RS01745: HMPREF1058_RS01745 - PorT family protein, at 51,438 to 52,121
_RS01745
HMPREF1058_RS01740: HMPREF1058_RS01740 - LysM peptidoglycan-binding domain-containing protein, at 52,121 to 53,929
_RS01740
Position (kb) 51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 50.611 kb on + strand, within HMPREF1058_RS01755 at 50.645 kb on + strand at 50.645 kb on + strand at 50.786 kb on + strand at 50.880 kb on + strand at 50.880 kb on + strand at 51.353 kb on - strand at 51.367 kb on - strand at 51.369 kb on + strand at 51.373 kb on + strand at 51.373 kb on + strand at 51.374 kb on - strand at 51.415 kb on + strand at 51.449 kb on + strand at 51.449 kb on + strand at 51.449 kb on + strand at 51.449 kb on + strand at 51.450 kb on - strand at 51.450 kb on - strand at 51.450 kb on - strand at 51.450 kb on - strand at 51.461 kb on - strand at 51.461 kb on - strand at 51.547 kb on + strand, within HMPREF1058_RS01745 at 51.548 kb on - strand, within HMPREF1058_RS01745 at 51.548 kb on - strand, within HMPREF1058_RS01745 at 51.548 kb on - strand, within HMPREF1058_RS01745 at 51.588 kb on + strand, within HMPREF1058_RS01745 at 51.588 kb on + strand, within HMPREF1058_RS01745 at 51.588 kb on + strand, within HMPREF1058_RS01745 at 51.681 kb on + strand, within HMPREF1058_RS01745 at 51.877 kb on - strand, within HMPREF1058_RS01745 at 51.923 kb on + strand, within HMPREF1058_RS01745 at 51.923 kb on + strand, within HMPREF1058_RS01745 at 51.923 kb on + strand, within HMPREF1058_RS01745 at 51.923 kb on + strand, within HMPREF1058_RS01745 at 51.924 kb on - strand, within HMPREF1058_RS01745 at 51.924 kb on - strand, within HMPREF1058_RS01745 at 51.925 kb on + strand, within HMPREF1058_RS01745 at 51.925 kb on + strand, within HMPREF1058_RS01745 at 52.112 kb on - strand at 52.138 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 50,611 + HMPREF1058_RS01755 0.88 +2.0 50,645 + -2.0 50,645 + -0.6 50,786 + -0.9 50,880 + -0.6 50,880 + -1.9 51,353 - -0.7 51,367 - -1.2 51,369 + +0.8 51,373 + +2.4 51,373 + +0.1 51,374 - +0.5 51,415 + +1.4 51,449 + +0.4 51,449 + -3.2 51,449 + +0.7 51,449 + -0.6 51,450 - -1.0 51,450 - -1.0 51,450 - -0.5 51,450 - +0.7 51,461 - -0.3 51,461 - -0.2 51,547 + HMPREF1058_RS01745 0.16 -0.8 51,548 - HMPREF1058_RS01745 0.16 -0.0 51,548 - HMPREF1058_RS01745 0.16 -1.7 51,548 - HMPREF1058_RS01745 0.16 +0.2 51,588 + HMPREF1058_RS01745 0.22 -0.8 51,588 + HMPREF1058_RS01745 0.22 +3.0 51,588 + HMPREF1058_RS01745 0.22 +0.6 51,681 + HMPREF1058_RS01745 0.36 -0.2 51,877 - HMPREF1058_RS01745 0.64 -2.1 51,923 + HMPREF1058_RS01745 0.71 -0.0 51,923 + HMPREF1058_RS01745 0.71 +1.4 51,923 + HMPREF1058_RS01745 0.71 -1.0 51,923 + HMPREF1058_RS01745 0.71 -1.4 51,924 - HMPREF1058_RS01745 0.71 -1.1 51,924 - HMPREF1058_RS01745 0.71 -0.9 51,925 + HMPREF1058_RS01745 0.71 +0.2 51,925 + HMPREF1058_RS01745 0.71 -0.3 52,112 - -0.0 52,138 + -0.5
Or see this region's nucleotide sequence