Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01715

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
58,914	+		HMPREF1058_RS01725	0.84	-1.8
58,992	+		HMPREF1058_RS01725	0.89	-1.5
59,054	+				-0.4
59,194	+				+0.3
59,194	+				+2.3
59,194	+				+0.9
59,194	-				+2.2
59,195	-				+2.0
59,195	-				-1.6
59,195	-				-0.3
59,196	+				+1.8
59,197	-				-1.9
59,198	+				-2.6
59,285	+				+2.0
59,361	+		HMPREF1058_RS01720	0.19	-1.2
59,362	-		HMPREF1058_RS01720	0.19	-0.3
59,362	-		HMPREF1058_RS01720	0.19	+1.8
59,557	+		HMPREF1058_RS01720	0.50	+0.2
59,561	-		HMPREF1058_RS01720	0.51	+0.5
59,586	-		HMPREF1058_RS01720	0.55	+1.1
59,723	+		HMPREF1058_RS01720	0.77	+2.0
59,723	+		HMPREF1058_RS01720	0.77	+1.4
59,759	-		HMPREF1058_RS01720	0.83	+0.6
59,791	+		HMPREF1058_RS01720	0.88	-0.6
59,819	+				-2.8
59,912	+				+1.3
59,917	+		HMPREF1058_RS01715	0.20	-0.3
59,918	-		HMPREF1058_RS01715	0.20	-1.3
59,933	+		HMPREF1058_RS01715	0.26	-0.9
60,049	+		HMPREF1058_RS01715	0.67	-2.1
60,089	+		HMPREF1058_RS01715	0.82	-0.2
60,089	+		HMPREF1058_RS01715	0.82	+0.0
60,089	+		HMPREF1058_RS01715	0.82	+0.7
60,089	+		HMPREF1058_RS01715	0.82	-1.3
60,090	-		HMPREF1058_RS01715	0.82	-1.4
60,094	-		HMPREF1058_RS01715	0.84	-1.7
60,094	-		HMPREF1058_RS01715	0.84	-0.2
60,099	-		HMPREF1058_RS01715	0.85	-2.8
60,118	+				+0.1
60,119	-				+0.5
60,126	-				+1.3
60,127	+				+0.2
60,127	+				-0.7
60,127	+				-1.0
60,127	+				-0.3
60,128	-				+2.0
60,128	-				+1.1
60,131	-				+1.3
60,133	+				+0.8
60,167	+				-2.7
60,207	+				+2.1
60,207	+				+0.9
60,208	-				-0.4
60,208	-				-0.6
60,210	-				-1.7
60,210	-				+0.7
60,300	+				-0.0
60,301	-				-1.9
60,321	-				-1.0
60,344	+				-0.8
60,344	+				-0.2
60,354	+				+2.4
60,354	+				+0.3
60,354	+				-2.6
60,355	-				-1.1
60,355	-				-2.5
60,362	-				+1.1
60,362	-				-0.4
60,362	-				-0.8
60,362	-				-0.3
60,366	-				+0.1
60,366	-				+0.4
60,424	+				+3.0
60,447	+				-0.5
60,495	+				-2.1
60,495	+				-0.5
60,496	-				-1.3
60,589	-				+2.4
60,620	-				+0.1
60,696	-				+0.3
60,697	+				+0.6
60,733	-				+0.2
60,858	+		HMPREF1058_RS01710	0.12	-0.0
60,858	+		HMPREF1058_RS01710	0.12	-1.5
60,859	-		HMPREF1058_RS01710	0.12	+0.8
60,861	-		HMPREF1058_RS01710	0.12	+1.0
60,874	-		HMPREF1058_RS01710	0.14	-1.8
60,900	-		HMPREF1058_RS01710	0.17	+0.2