Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01690 and HMPREF1058_RS01685 are separated by 109 nucleotides HMPREF1058_RS01685 and HMPREF1058_RS01680 are separated by 253 nucleotides
HMPREF1058_RS01690: HMPREF1058_RS01690 - sugar kinase, at 66,065 to 67,087
_RS01690
HMPREF1058_RS01685: HMPREF1058_RS01685 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 67,197 to 67,871
_RS01685
HMPREF1058_RS01680: HMPREF1058_RS01680 - M48 family metallopeptidase, at 68,125 to 68,943
_RS01680
Position (kb) 67
68 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 66.215 kb on + strand, within HMPREF1058_RS01690 at 66.279 kb on - strand, within HMPREF1058_RS01690 at 66.329 kb on + strand, within HMPREF1058_RS01690 at 66.330 kb on - strand, within HMPREF1058_RS01690 at 66.375 kb on - strand, within HMPREF1058_RS01690 at 66.434 kb on - strand, within HMPREF1058_RS01690 at 66.630 kb on + strand, within HMPREF1058_RS01690 at 66.630 kb on + strand, within HMPREF1058_RS01690 at 66.630 kb on + strand, within HMPREF1058_RS01690 at 66.630 kb on + strand, within HMPREF1058_RS01690 at 66.631 kb on - strand, within HMPREF1058_RS01690 at 66.631 kb on - strand, within HMPREF1058_RS01690 at 66.636 kb on + strand, within HMPREF1058_RS01690 at 66.636 kb on + strand, within HMPREF1058_RS01690 at 66.636 kb on + strand, within HMPREF1058_RS01690 at 66.637 kb on - strand, within HMPREF1058_RS01690 at 66.640 kb on + strand, within HMPREF1058_RS01690 at 66.642 kb on + strand, within HMPREF1058_RS01690 at 66.642 kb on + strand, within HMPREF1058_RS01690 at 66.725 kb on + strand, within HMPREF1058_RS01690 at 66.745 kb on + strand, within HMPREF1058_RS01690 at 66.767 kb on - strand, within HMPREF1058_RS01690 at 66.770 kb on + strand, within HMPREF1058_RS01690 at 66.771 kb on - strand, within HMPREF1058_RS01690 at 66.771 kb on - strand, within HMPREF1058_RS01690 at 66.782 kb on - strand, within HMPREF1058_RS01690 at 66.826 kb on + strand, within HMPREF1058_RS01690 at 66.827 kb on - strand, within HMPREF1058_RS01690 at 67.001 kb on - strand at 67.121 kb on + strand at 67.146 kb on + strand at 67.153 kb on - strand at 67.188 kb on + strand at 67.190 kb on + strand at 67.423 kb on + strand, within HMPREF1058_RS01685 at 67.423 kb on + strand, within HMPREF1058_RS01685 at 67.423 kb on + strand, within HMPREF1058_RS01685 at 67.487 kb on - strand, within HMPREF1058_RS01685 at 67.542 kb on + strand, within HMPREF1058_RS01685 at 67.545 kb on - strand, within HMPREF1058_RS01685 at 67.628 kb on - strand, within HMPREF1058_RS01685 at 67.790 kb on - strand, within HMPREF1058_RS01685 at 67.810 kb on - strand at 67.814 kb on - strand at 67.843 kb on - strand at 67.934 kb on - strand at 67.946 kb on - strand at 68.058 kb on - strand at 68.112 kb on - strand at 68.162 kb on + strand at 68.275 kb on + strand, within HMPREF1058_RS01680 at 68.340 kb on + strand, within HMPREF1058_RS01680 at 68.410 kb on + strand, within HMPREF1058_RS01680 at 68.410 kb on + strand, within HMPREF1058_RS01680 at 68.413 kb on + strand, within HMPREF1058_RS01680 at 68.413 kb on + strand, within HMPREF1058_RS01680 at 68.426 kb on + strand, within HMPREF1058_RS01680 at 68.426 kb on + strand, within HMPREF1058_RS01680 at 68.676 kb on + strand, within HMPREF1058_RS01680 at 68.680 kb on + strand, within HMPREF1058_RS01680 at 68.842 kb on - strand, within HMPREF1058_RS01680
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 66,215 + HMPREF1058_RS01690 0.15 -1.2 66,279 - HMPREF1058_RS01690 0.21 +1.8 66,329 + HMPREF1058_RS01690 0.26 -1.2 66,330 - HMPREF1058_RS01690 0.26 -0.0 66,375 - HMPREF1058_RS01690 0.30 -0.2 66,434 - HMPREF1058_RS01690 0.36 -2.8 66,630 + HMPREF1058_RS01690 0.55 -0.9 66,630 + HMPREF1058_RS01690 0.55 -1.9 66,630 + HMPREF1058_RS01690 0.55 +1.0 66,630 + HMPREF1058_RS01690 0.55 -1.8 66,631 - HMPREF1058_RS01690 0.55 +1.3 66,631 - HMPREF1058_RS01690 0.55 +0.4 66,636 + HMPREF1058_RS01690 0.56 -0.4 66,636 + HMPREF1058_RS01690 0.56 +3.0 66,636 + HMPREF1058_RS01690 0.56 -1.0 66,637 - HMPREF1058_RS01690 0.56 +1.0 66,640 + HMPREF1058_RS01690 0.56 +0.4 66,642 + HMPREF1058_RS01690 0.56 -1.7 66,642 + HMPREF1058_RS01690 0.56 -3.0 66,725 + HMPREF1058_RS01690 0.65 -1.2 66,745 + HMPREF1058_RS01690 0.66 +0.7 66,767 - HMPREF1058_RS01690 0.69 -0.5 66,770 + HMPREF1058_RS01690 0.69 -2.2 66,771 - HMPREF1058_RS01690 0.69 -2.3 66,771 - HMPREF1058_RS01690 0.69 +2.0 66,782 - HMPREF1058_RS01690 0.70 -3.4 66,826 + HMPREF1058_RS01690 0.74 -3.6 66,827 - HMPREF1058_RS01690 0.74 -2.0 67,001 - +0.5 67,121 + -2.2 67,146 + +0.4 67,153 - -0.0 67,188 + +0.1 67,190 + -0.9 67,423 + HMPREF1058_RS01685 0.33 -1.7 67,423 + HMPREF1058_RS01685 0.33 -0.6 67,423 + HMPREF1058_RS01685 0.33 +1.0 67,487 - HMPREF1058_RS01685 0.43 +0.2 67,542 + HMPREF1058_RS01685 0.51 -0.6 67,545 - HMPREF1058_RS01685 0.52 -1.2 67,628 - HMPREF1058_RS01685 0.64 -2.9 67,790 - HMPREF1058_RS01685 0.88 +2.0 67,810 - -2.3 67,814 - -0.8 67,843 - -3.8 67,934 - -1.6 67,946 - -0.7 68,058 - +1.1 68,112 - -1.3 68,162 + +0.4 68,275 + HMPREF1058_RS01680 0.18 -0.0 68,340 + HMPREF1058_RS01680 0.26 -1.3 68,410 + HMPREF1058_RS01680 0.35 +0.8 68,410 + HMPREF1058_RS01680 0.35 -3.2 68,413 + HMPREF1058_RS01680 0.35 -1.6 68,413 + HMPREF1058_RS01680 0.35 -0.5 68,426 + HMPREF1058_RS01680 0.37 -0.7 68,426 + HMPREF1058_RS01680 0.37 -1.1 68,676 + HMPREF1058_RS01680 0.67 -0.5 68,680 + HMPREF1058_RS01680 0.68 -0.5 68,842 - HMPREF1058_RS01680 0.88 -0.0
Or see this region's nucleotide sequence