Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01630 and HMPREF1058_RS01625 are separated by 461 nucleotides HMPREF1058_RS01625 and HMPREF1058_RS01620 are separated by 133 nucleotides HMPREF1058_RS01620 and HMPREF1058_RS01615 are separated by 20 nucleotides HMPREF1058_RS01615 and HMPREF1058_RS01610 are separated by 24 nucleotides HMPREF1058_RS01610 and HMPREF1058_RS01605 are separated by 88 nucleotides
HMPREF1058_RS01630: HMPREF1058_RS01630 - hypothetical protein, at 80,012 to 80,596
_RS01630
HMPREF1058_RS01625: HMPREF1058_RS01625 - hypothetical protein, at 81,058 to 81,276
_RS01625
HMPREF1058_RS01620: HMPREF1058_RS01620 - tRNA-Lys, at 81,410 to 81,482
_RS01620
HMPREF1058_RS01615: HMPREF1058_RS01615 - tRNA-Lys, at 81,503 to 81,575
_RS01615
HMPREF1058_RS01610: HMPREF1058_RS01610 - tRNA-Lys, at 81,600 to 81,672
_RS01610
HMPREF1058_RS01605: HMPREF1058_RS01605 - MBL fold metallo-hydrolase, at 81,761 to 82,564
_RS01605
Position (kb) 81
82 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 80.524 kb on + strand, within HMPREF1058_RS01630 at 80.526 kb on + strand, within HMPREF1058_RS01630 at 80.527 kb on - strand, within HMPREF1058_RS01630 at 80.529 kb on + strand, within HMPREF1058_RS01630 at 80.530 kb on - strand, within HMPREF1058_RS01630 at 80.552 kb on - strand at 80.594 kb on + strand at 80.601 kb on - strand at 80.636 kb on + strand at 80.637 kb on - strand at 80.639 kb on + strand at 80.640 kb on - strand at 80.687 kb on - strand at 80.746 kb on + strand at 80.747 kb on - strand at 80.826 kb on - strand at 80.869 kb on - strand at 80.873 kb on - strand at 80.939 kb on + strand at 80.983 kb on - strand at 81.026 kb on - strand at 81.082 kb on - strand, within HMPREF1058_RS01625 at 81.123 kb on - strand, within HMPREF1058_RS01625 at 81.147 kb on + strand, within HMPREF1058_RS01625 at 81.148 kb on - strand, within HMPREF1058_RS01625 at 81.153 kb on - strand, within HMPREF1058_RS01625 at 81.201 kb on + strand, within HMPREF1058_RS01625 at 81.274 kb on + strand at 81.275 kb on - strand at 81.279 kb on + strand at 81.375 kb on + strand at 81.462 kb on + strand, within HMPREF1058_RS01620 at 81.474 kb on + strand, within HMPREF1058_RS01620 at 81.475 kb on - strand at 81.540 kb on - strand, within HMPREF1058_RS01615 at 81.568 kb on - strand at 81.568 kb on - strand at 81.664 kb on + strand, within HMPREF1058_RS01610 at 81.801 kb on - strand at 81.902 kb on - strand, within HMPREF1058_RS01605 at 81.979 kb on + strand, within HMPREF1058_RS01605 at 81.979 kb on + strand, within HMPREF1058_RS01605 at 81.979 kb on + strand, within HMPREF1058_RS01605 at 82.001 kb on - strand, within HMPREF1058_RS01605 at 82.084 kb on + strand, within HMPREF1058_RS01605 at 82.085 kb on - strand, within HMPREF1058_RS01605 at 82.088 kb on + strand, within HMPREF1058_RS01605 at 82.088 kb on + strand, within HMPREF1058_RS01605 at 82.088 kb on + strand, within HMPREF1058_RS01605 at 82.089 kb on - strand, within HMPREF1058_RS01605 at 82.090 kb on + strand, within HMPREF1058_RS01605 at 82.091 kb on - strand, within HMPREF1058_RS01605 at 82.092 kb on + strand, within HMPREF1058_RS01605 at 82.093 kb on - strand, within HMPREF1058_RS01605 at 82.093 kb on - strand, within HMPREF1058_RS01605 at 82.093 kb on - strand, within HMPREF1058_RS01605 at 82.157 kb on - strand, within HMPREF1058_RS01605 at 82.161 kb on - strand, within HMPREF1058_RS01605 at 82.260 kb on - strand, within HMPREF1058_RS01605 at 82.314 kb on - strand, within HMPREF1058_RS01605 at 82.460 kb on - strand, within HMPREF1058_RS01605 at 82.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 80,524 + HMPREF1058_RS01630 0.88 +0.3 80,526 + HMPREF1058_RS01630 0.88 +0.5 80,527 - HMPREF1058_RS01630 0.88 -1.3 80,529 + HMPREF1058_RS01630 0.88 -3.2 80,530 - HMPREF1058_RS01630 0.89 +0.8 80,552 - -0.0 80,594 + -0.8 80,601 - +0.7 80,636 + -0.2 80,637 - -3.8 80,639 + +0.5 80,640 - +0.6 80,687 - +0.5 80,746 + -2.3 80,747 - +1.8 80,826 - +1.1 80,869 - -1.1 80,873 - +2.4 80,939 + +0.3 80,983 - -0.3 81,026 - +0.8 81,082 - HMPREF1058_RS01625 0.11 +3.3 81,123 - HMPREF1058_RS01625 0.30 +0.2 81,147 + HMPREF1058_RS01625 0.41 -1.2 81,148 - HMPREF1058_RS01625 0.41 -0.3 81,153 - HMPREF1058_RS01625 0.43 +0.2 81,201 + HMPREF1058_RS01625 0.65 -1.2 81,274 + -1.5 81,275 - -3.0 81,279 + +1.6 81,375 + +0.7 81,462 + HMPREF1058_RS01620 0.71 +0.9 81,474 + HMPREF1058_RS01620 0.88 -1.1 81,475 - -1.7 81,540 - HMPREF1058_RS01615 0.51 -3.0 81,568 - +1.6 81,568 - -0.7 81,664 + HMPREF1058_RS01610 0.88 +1.4 81,801 - -0.2 81,902 - HMPREF1058_RS01605 0.18 +1.8 81,979 + HMPREF1058_RS01605 0.27 -0.6 81,979 + HMPREF1058_RS01605 0.27 -2.4 81,979 + HMPREF1058_RS01605 0.27 -2.5 82,001 - HMPREF1058_RS01605 0.30 +0.7 82,084 + HMPREF1058_RS01605 0.40 +1.1 82,085 - HMPREF1058_RS01605 0.40 -0.8 82,088 + HMPREF1058_RS01605 0.41 -0.8 82,088 + HMPREF1058_RS01605 0.41 +1.2 82,088 + HMPREF1058_RS01605 0.41 +1.5 82,089 - HMPREF1058_RS01605 0.41 +0.7 82,090 + HMPREF1058_RS01605 0.41 +0.4 82,091 - HMPREF1058_RS01605 0.41 +0.9 82,092 + HMPREF1058_RS01605 0.41 -0.4 82,093 - HMPREF1058_RS01605 0.41 -1.6 82,093 - HMPREF1058_RS01605 0.41 +2.0 82,093 - HMPREF1058_RS01605 0.41 -1.1 82,157 - HMPREF1058_RS01605 0.49 +0.9 82,161 - HMPREF1058_RS01605 0.50 +0.8 82,260 - HMPREF1058_RS01605 0.62 -0.2 82,314 - HMPREF1058_RS01605 0.69 +0.4 82,460 - HMPREF1058_RS01605 0.87 +0.1 82,547 + +0.4
Or see this region's nucleotide sequence