Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01595 and HMPREF1058_RS01590 are separated by 88 nucleotides HMPREF1058_RS01590 and HMPREF1058_RS01585 are separated by 325 nucleotides
HMPREF1058_RS01595: HMPREF1058_RS01595 - TlpA family protein disulfide reductase, at 83,862 to 85,061
_RS01595
HMPREF1058_RS01590: HMPREF1058_RS01590 - glucuronate isomerase, at 85,150 to 86,556
_RS01590
HMPREF1058_RS01585: HMPREF1058_RS01585 - tagaturonate reductase, at 86,882 to 88,321
_RS01585
Position (kb) 85
86
87 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 84.157 kb on + strand, within HMPREF1058_RS01595 at 84.266 kb on + strand, within HMPREF1058_RS01595 at 84.267 kb on - strand, within HMPREF1058_RS01595 at 84.301 kb on + strand, within HMPREF1058_RS01595 at 84.302 kb on - strand, within HMPREF1058_RS01595 at 84.302 kb on - strand, within HMPREF1058_RS01595 at 84.302 kb on - strand, within HMPREF1058_RS01595 at 84.302 kb on - strand, within HMPREF1058_RS01595 at 84.305 kb on + strand, within HMPREF1058_RS01595 at 84.331 kb on - strand, within HMPREF1058_RS01595 at 84.342 kb on - strand, within HMPREF1058_RS01595 at 84.362 kb on + strand, within HMPREF1058_RS01595 at 84.418 kb on + strand, within HMPREF1058_RS01595 at 84.418 kb on + strand, within HMPREF1058_RS01595 at 84.435 kb on + strand, within HMPREF1058_RS01595 at 84.473 kb on + strand, within HMPREF1058_RS01595 at 84.474 kb on - strand, within HMPREF1058_RS01595 at 84.500 kb on + strand, within HMPREF1058_RS01595 at 84.501 kb on - strand, within HMPREF1058_RS01595 at 84.501 kb on - strand, within HMPREF1058_RS01595 at 84.521 kb on + strand, within HMPREF1058_RS01595 at 84.532 kb on + strand, within HMPREF1058_RS01595 at 84.585 kb on + strand, within HMPREF1058_RS01595 at 84.679 kb on + strand, within HMPREF1058_RS01595 at 84.717 kb on - strand, within HMPREF1058_RS01595 at 84.734 kb on + strand, within HMPREF1058_RS01595 at 84.735 kb on - strand, within HMPREF1058_RS01595 at 84.802 kb on - strand, within HMPREF1058_RS01595 at 84.891 kb on + strand, within HMPREF1058_RS01595 at 84.892 kb on - strand, within HMPREF1058_RS01595 at 84.984 kb on - strand at 85.130 kb on - strand at 85.179 kb on + strand at 85.179 kb on + strand at 85.188 kb on + strand at 85.333 kb on - strand, within HMPREF1058_RS01590 at 85.336 kb on + strand, within HMPREF1058_RS01590 at 85.484 kb on - strand, within HMPREF1058_RS01590 at 85.511 kb on + strand, within HMPREF1058_RS01590 at 85.512 kb on - strand, within HMPREF1058_RS01590 at 85.711 kb on + strand, within HMPREF1058_RS01590 at 85.712 kb on - strand, within HMPREF1058_RS01590 at 85.712 kb on - strand, within HMPREF1058_RS01590 at 85.774 kb on + strand, within HMPREF1058_RS01590 at 85.774 kb on + strand, within HMPREF1058_RS01590 at 85.774 kb on + strand, within HMPREF1058_RS01590 at 85.775 kb on - strand, within HMPREF1058_RS01590 at 85.775 kb on - strand, within HMPREF1058_RS01590 at 85.775 kb on - strand, within HMPREF1058_RS01590 at 85.775 kb on - strand, within HMPREF1058_RS01590 at 85.783 kb on - strand, within HMPREF1058_RS01590 at 85.787 kb on - strand, within HMPREF1058_RS01590 at 85.788 kb on + strand, within HMPREF1058_RS01590 at 85.824 kb on - strand, within HMPREF1058_RS01590 at 85.937 kb on - strand, within HMPREF1058_RS01590 at 85.958 kb on + strand, within HMPREF1058_RS01590 at 85.958 kb on + strand, within HMPREF1058_RS01590 at 85.959 kb on - strand, within HMPREF1058_RS01590 at 85.959 kb on - strand, within HMPREF1058_RS01590 at 86.092 kb on - strand at 86.252 kb on + strand, within HMPREF1058_RS01590 at 86.253 kb on - strand, within HMPREF1058_RS01590 at 86.253 kb on - strand, within HMPREF1058_RS01590 at 86.271 kb on + strand, within HMPREF1058_RS01590 at 86.272 kb on - strand, within HMPREF1058_RS01590 at 86.273 kb on + strand, within HMPREF1058_RS01590 at 86.376 kb on + strand, within HMPREF1058_RS01590 at 86.377 kb on - strand, within HMPREF1058_RS01590 at 86.379 kb on - strand, within HMPREF1058_RS01590 at 86.469 kb on + strand at 86.869 kb on + strand at 86.871 kb on + strand at 86.987 kb on + strand at 86.988 kb on - strand at 86.988 kb on - strand at 86.988 kb on - strand at 87.094 kb on - strand, within HMPREF1058_RS01585 at 87.094 kb on - strand, within HMPREF1058_RS01585 at 87.229 kb on + strand, within HMPREF1058_RS01585 at 87.236 kb on - strand, within HMPREF1058_RS01585 at 87.437 kb on + strand, within HMPREF1058_RS01585 at 87.438 kb on - strand, within HMPREF1058_RS01585 at 87.500 kb on + strand, within HMPREF1058_RS01585 at 87.500 kb on + strand, within HMPREF1058_RS01585 at 87.501 kb on - strand, within HMPREF1058_RS01585
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 84,157 + HMPREF1058_RS01595 0.25 +0.3 84,266 + HMPREF1058_RS01595 0.34 +1.0 84,267 - HMPREF1058_RS01595 0.34 +2.0 84,301 + HMPREF1058_RS01595 0.37 -1.0 84,302 - HMPREF1058_RS01595 0.37 -2.6 84,302 - HMPREF1058_RS01595 0.37 -0.7 84,302 - HMPREF1058_RS01595 0.37 -1.5 84,302 - HMPREF1058_RS01595 0.37 -2.3 84,305 + HMPREF1058_RS01595 0.37 +1.1 84,331 - HMPREF1058_RS01595 0.39 +0.4 84,342 - HMPREF1058_RS01595 0.40 +0.7 84,362 + HMPREF1058_RS01595 0.42 +1.8 84,418 + HMPREF1058_RS01595 0.46 -0.7 84,418 + HMPREF1058_RS01595 0.46 +1.3 84,435 + HMPREF1058_RS01595 0.48 -1.3 84,473 + HMPREF1058_RS01595 0.51 -1.1 84,474 - HMPREF1058_RS01595 0.51 -2.3 84,500 + HMPREF1058_RS01595 0.53 -3.2 84,501 - HMPREF1058_RS01595 0.53 -0.8 84,501 - HMPREF1058_RS01595 0.53 +0.0 84,521 + HMPREF1058_RS01595 0.55 -0.5 84,532 + HMPREF1058_RS01595 0.56 +1.9 84,585 + HMPREF1058_RS01595 0.60 -1.1 84,679 + HMPREF1058_RS01595 0.68 -2.0 84,717 - HMPREF1058_RS01595 0.71 -0.1 84,734 + HMPREF1058_RS01595 0.73 -1.4 84,735 - HMPREF1058_RS01595 0.73 -1.2 84,802 - HMPREF1058_RS01595 0.78 +0.2 84,891 + HMPREF1058_RS01595 0.86 +0.2 84,892 - HMPREF1058_RS01595 0.86 +2.2 84,984 - -1.9 85,130 - -0.7 85,179 + -1.3 85,179 + -2.9 85,188 + +2.0 85,333 - HMPREF1058_RS01590 0.13 +0.3 85,336 + HMPREF1058_RS01590 0.13 -0.9 85,484 - HMPREF1058_RS01590 0.24 -0.5 85,511 + HMPREF1058_RS01590 0.26 -1.8 85,512 - HMPREF1058_RS01590 0.26 -0.6 85,711 + HMPREF1058_RS01590 0.40 +0.1 85,712 - HMPREF1058_RS01590 0.40 -1.5 85,712 - HMPREF1058_RS01590 0.40 -1.6 85,774 + HMPREF1058_RS01590 0.44 -0.6 85,774 + HMPREF1058_RS01590 0.44 +0.7 85,774 + HMPREF1058_RS01590 0.44 -2.2 85,775 - HMPREF1058_RS01590 0.44 -0.3 85,775 - HMPREF1058_RS01590 0.44 -1.6 85,775 - HMPREF1058_RS01590 0.44 +0.4 85,775 - HMPREF1058_RS01590 0.44 -1.9 85,783 - HMPREF1058_RS01590 0.45 -0.5 85,787 - HMPREF1058_RS01590 0.45 -1.0 85,788 + HMPREF1058_RS01590 0.45 -1.8 85,824 - HMPREF1058_RS01590 0.48 -3.8 85,937 - HMPREF1058_RS01590 0.56 -0.9 85,958 + HMPREF1058_RS01590 0.57 -3.4 85,958 + HMPREF1058_RS01590 0.57 -2.1 85,959 - HMPREF1058_RS01590 0.57 -2.2 85,959 - HMPREF1058_RS01590 0.57 +3.0 86,092 - +1.8 86,252 + HMPREF1058_RS01590 0.78 -1.5 86,253 - HMPREF1058_RS01590 0.78 -1.1 86,253 - HMPREF1058_RS01590 0.78 -1.5 86,271 + HMPREF1058_RS01590 0.80 -0.1 86,272 - HMPREF1058_RS01590 0.80 +0.7 86,273 + HMPREF1058_RS01590 0.80 +1.5 86,376 + HMPREF1058_RS01590 0.87 -1.5 86,377 - HMPREF1058_RS01590 0.87 -1.5 86,379 - HMPREF1058_RS01590 0.87 -1.2 86,469 + -1.3 86,869 + +0.2 86,871 + -3.3 86,987 + -0.6 86,988 - +0.1 86,988 - -0.4 86,988 - -3.0 87,094 - HMPREF1058_RS01585 0.15 +0.5 87,094 - HMPREF1058_RS01585 0.15 -0.6 87,229 + HMPREF1058_RS01585 0.24 +1.1 87,236 - HMPREF1058_RS01585 0.25 +0.3 87,437 + HMPREF1058_RS01585 0.39 -1.7 87,438 - HMPREF1058_RS01585 0.39 +2.4 87,500 + HMPREF1058_RS01585 0.43 -1.1 87,500 + HMPREF1058_RS01585 0.43 -1.5 87,501 - HMPREF1058_RS01585 0.43 -0.1
Or see this region's nucleotide sequence