Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01570

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS01580 and HMPREF1058_RS01575 overlap by 38 nucleotidesHMPREF1058_RS01575 and HMPREF1058_RS01570 are separated by 103 nucleotidesHMPREF1058_RS01570 and HMPREF1058_RS01565 are separated by 11 nucleotides HMPREF1058_RS01580: HMPREF1058_RS01580 - hypothetical protein, at 88,423 to 88,836 _RS01580 HMPREF1058_RS01575: HMPREF1058_RS01575 - precorrin-2 C(20)-methyltransferase, at 88,799 to 89,527 _RS01575 HMPREF1058_RS01570: HMPREF1058_RS01570 - ABC transporter substrate-binding protein, at 89,631 to 90,782 _RS01570 HMPREF1058_RS01565: HMPREF1058_RS01565 - iron ABC transporter permease, at 90,794 to 91,831 _RS01565 Position (kb) 89 90 91Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 88.866 kb on - strandat 88.966 kb on - strand, within HMPREF1058_RS01575at 88.966 kb on - strand, within HMPREF1058_RS01575at 88.976 kb on + strand, within HMPREF1058_RS01575at 88.976 kb on + strand, within HMPREF1058_RS01575at 88.976 kb on + strand, within HMPREF1058_RS01575at 89.031 kb on + strand, within HMPREF1058_RS01575at 89.031 kb on + strand, within HMPREF1058_RS01575at 89.032 kb on - strand, within HMPREF1058_RS01575at 89.054 kb on - strand, within HMPREF1058_RS01575at 89.103 kb on - strand, within HMPREF1058_RS01575at 89.189 kb on + strand, within HMPREF1058_RS01575at 89.190 kb on - strand, within HMPREF1058_RS01575at 89.194 kb on - strand, within HMPREF1058_RS01575at 89.194 kb on - strand, within HMPREF1058_RS01575at 89.346 kb on - strand, within HMPREF1058_RS01575at 89.346 kb on - strand, within HMPREF1058_RS01575at 89.347 kb on + strand, within HMPREF1058_RS01575at 89.363 kb on + strand, within HMPREF1058_RS01575at 89.364 kb on - strand, within HMPREF1058_RS01575at 89.369 kb on - strand, within HMPREF1058_RS01575at 89.430 kb on + strand, within HMPREF1058_RS01575at 89.431 kb on - strand, within HMPREF1058_RS01575at 89.432 kb on + strand, within HMPREF1058_RS01575at 89.433 kb on - strand, within HMPREF1058_RS01575at 89.433 kb on - strandat 89.512 kb on - strandat 89.535 kb on - strandat 89.551 kb on + strandat 89.583 kb on - strandat 89.747 kb on + strand, within HMPREF1058_RS01570at 89.769 kb on + strandat 89.783 kb on + strand, within HMPREF1058_RS01570at 90.071 kb on + strand, within HMPREF1058_RS01570at 90.072 kb on - strand, within HMPREF1058_RS01570at 90.076 kb on + strand, within HMPREF1058_RS01570at 90.076 kb on + strand, within HMPREF1058_RS01570at 90.081 kb on - strand, within HMPREF1058_RS01570at 90.111 kb on - strand, within HMPREF1058_RS01570at 90.181 kb on + strand, within HMPREF1058_RS01570at 90.213 kb on - strand, within HMPREF1058_RS01570at 90.282 kb on - strand, within HMPREF1058_RS01570at 90.287 kb on + strand, within HMPREF1058_RS01570at 90.287 kb on + strand, within HMPREF1058_RS01570at 90.308 kb on + strand, within HMPREF1058_RS01570at 90.559 kb on - strand, within HMPREF1058_RS01570at 90.579 kb on - strand, within HMPREF1058_RS01570at 90.624 kb on + strand, within HMPREF1058_RS01570at 90.625 kb on - strand, within HMPREF1058_RS01570at 90.646 kb on - strand, within HMPREF1058_RS01570at 90.650 kb on + strand, within HMPREF1058_RS01570at 90.651 kb on - strand, within HMPREF1058_RS01570at 90.673 kb on - strandat 90.680 kb on + strandat 90.776 kb on + strandat 90.789 kb on - strandat 90.792 kb on - strandat 90.815 kb on + strandat 90.870 kb on + strandat 90.871 kb on - strandat 90.938 kb on - strand, within HMPREF1058_RS01565at 90.938 kb on - strand, within HMPREF1058_RS01565at 90.940 kb on - strand, within HMPREF1058_RS01565at 90.949 kb on + strand, within HMPREF1058_RS01565at 90.950 kb on - strand, within HMPREF1058_RS01565at 90.950 kb on - strand, within HMPREF1058_RS01565at 91.155 kb on + strand, within HMPREF1058_RS01565at 91.180 kb on + strand, within HMPREF1058_RS01565at 91.222 kb on + strand, within HMPREF1058_RS01565at 91.246 kb on - strand, within HMPREF1058_RS01565at 91.259 kb on - strand, within HMPREF1058_RS01565at 91.290 kb on - strand, within HMPREF1058_RS01565at 91.352 kb on + strand, within HMPREF1058_RS01565at 91.352 kb on + strand, within HMPREF1058_RS01565at 91.353 kb on - strand, within HMPREF1058_RS01565at 91.412 kb on - strand, within HMPREF1058_RS01565at 91.412 kb on - strand, within HMPREF1058_RS01565at 91.412 kb on - strand, within HMPREF1058_RS01565at 91.413 kb on + strand, within HMPREF1058_RS01565at 91.414 kb on - strand, within HMPREF1058_RS01565at 91.417 kb on + strand, within HMPREF1058_RS01565at 91.417 kb on + strand, within HMPREF1058_RS01565at 91.418 kb on - strand, within HMPREF1058_RS01565at 91.418 kb on - strand, within HMPREF1058_RS01565at 91.491 kb on - strand, within HMPREF1058_RS01565at 91.491 kb on - strand, within HMPREF1058_RS01565at 91.515 kb on + strand, within HMPREF1058_RS01565at 91.516 kb on - strand, within HMPREF1058_RS01565at 91.516 kb on - strandat 91.560 kb on + strand, within HMPREF1058_RS01565

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
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88,866 - -1.9
88,966 - HMPREF1058_RS01575 0.23 +2.3
88,966 - HMPREF1058_RS01575 0.23 -0.2
88,976 + HMPREF1058_RS01575 0.24 +1.4
88,976 + HMPREF1058_RS01575 0.24 -1.5
88,976 + HMPREF1058_RS01575 0.24 -0.0
89,031 + HMPREF1058_RS01575 0.32 -2.1
89,031 + HMPREF1058_RS01575 0.32 -0.7
89,032 - HMPREF1058_RS01575 0.32 -0.7
89,054 - HMPREF1058_RS01575 0.35 -1.7
89,103 - HMPREF1058_RS01575 0.42 -0.2
89,189 + HMPREF1058_RS01575 0.53 -1.4
89,190 - HMPREF1058_RS01575 0.54 -2.5
89,194 - HMPREF1058_RS01575 0.54 -1.6
89,194 - HMPREF1058_RS01575 0.54 -1.7
89,346 - HMPREF1058_RS01575 0.75 -0.1
89,346 - HMPREF1058_RS01575 0.75 +0.7
89,347 + HMPREF1058_RS01575 0.75 -0.7
89,363 + HMPREF1058_RS01575 0.77 +2.0
89,364 - HMPREF1058_RS01575 0.78 +0.2
89,369 - HMPREF1058_RS01575 0.78 -2.6
89,430 + HMPREF1058_RS01575 0.87 -0.0
89,431 - HMPREF1058_RS01575 0.87 +1.0
89,432 + HMPREF1058_RS01575 0.87 -0.9
89,433 - HMPREF1058_RS01575 0.87 +0.7
89,433 - -0.7
89,512 - +2.8
89,535 - +1.4
89,551 + -0.0
89,583 - -1.5
89,747 + HMPREF1058_RS01570 0.10 +1.7
89,769 + +2.0
89,783 + HMPREF1058_RS01570 0.13 -1.8
90,071 + HMPREF1058_RS01570 0.38 -0.0
90,072 - HMPREF1058_RS01570 0.38 -3.3
90,076 + HMPREF1058_RS01570 0.39 -0.8
90,076 + HMPREF1058_RS01570 0.39 -0.7
90,081 - HMPREF1058_RS01570 0.39 +2.0
90,111 - HMPREF1058_RS01570 0.42 -2.6
90,181 + HMPREF1058_RS01570 0.48 -0.9
90,213 - HMPREF1058_RS01570 0.51 -1.5
90,282 - HMPREF1058_RS01570 0.57 -0.6
90,287 + HMPREF1058_RS01570 0.57 +0.4
90,287 + HMPREF1058_RS01570 0.57 -0.8
90,308 + HMPREF1058_RS01570 0.59 +2.0
90,559 - HMPREF1058_RS01570 0.81 -1.8
90,579 - HMPREF1058_RS01570 0.82 -1.3
90,624 + HMPREF1058_RS01570 0.86 +0.4
90,625 - HMPREF1058_RS01570 0.86 -2.9
90,646 - HMPREF1058_RS01570 0.88 -1.1
90,650 + HMPREF1058_RS01570 0.88 -2.1
90,651 - HMPREF1058_RS01570 0.89 -1.7
90,673 - +1.0
90,680 + -0.9
90,776 + +0.4
90,789 - +0.2
90,792 - +0.2
90,815 + -0.9
90,870 + +0.4
90,871 - -0.2
90,938 - HMPREF1058_RS01565 0.14 -4.3
90,938 - HMPREF1058_RS01565 0.14 +0.6
90,940 - HMPREF1058_RS01565 0.14 +2.4
90,949 + HMPREF1058_RS01565 0.15 -0.6
90,950 - HMPREF1058_RS01565 0.15 -0.8
90,950 - HMPREF1058_RS01565 0.15 +1.0
91,155 + HMPREF1058_RS01565 0.35 -1.9
91,180 + HMPREF1058_RS01565 0.37 +1.7
91,222 + HMPREF1058_RS01565 0.41 +0.8
91,246 - HMPREF1058_RS01565 0.44 +1.0
91,259 - HMPREF1058_RS01565 0.45 +1.0
91,290 - HMPREF1058_RS01565 0.48 -0.8
91,352 + HMPREF1058_RS01565 0.54 -3.2
91,352 + HMPREF1058_RS01565 0.54 +4.9
91,353 - HMPREF1058_RS01565 0.54 +2.7
91,412 - HMPREF1058_RS01565 0.60 +1.4
91,412 - HMPREF1058_RS01565 0.60 -1.0
91,412 - HMPREF1058_RS01565 0.60 -1.5
91,413 + HMPREF1058_RS01565 0.60 -2.6
91,414 - HMPREF1058_RS01565 0.60 -2.2
91,417 + HMPREF1058_RS01565 0.60 -0.3
91,417 + HMPREF1058_RS01565 0.60 -3.7
91,418 - HMPREF1058_RS01565 0.60 +0.9
91,418 - HMPREF1058_RS01565 0.60 -0.1
91,491 - HMPREF1058_RS01565 0.67 +0.4
91,491 - HMPREF1058_RS01565 0.67 +0.2
91,515 + HMPREF1058_RS01565 0.69 -1.4
91,516 - HMPREF1058_RS01565 0.70 +0.9
91,516 - +0.4
91,560 + HMPREF1058_RS01565 0.74 -0.1

Or see this region's nucleotide sequence