Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01500

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
107,940	-		HMPREF1058_RS01505	0.76	-0.5
107,954	-				+0.2
107,954	-		HMPREF1058_RS01505	0.77	-1.0
108,011	-		HMPREF1058_RS01505	0.79	+2.8
108,228	+		HMPREF1058_RS01505	0.89	-0.4
108,255	+				-0.0
108,256	-				-1.1
108,256	-				-0.7
108,335	+				-1.2
108,335	+				-1.5
108,516	-				+3.7
108,520	-				+0.6
108,671	-				+0.9
108,692	-				+0.1
108,799	+				-0.6
108,802	+				+1.4
108,804	+				-1.6
108,806	+				-1.7
108,807	-				-3.3
108,821	+				-2.2
108,885	+				-1.7
108,892	-				-0.8
108,923	+				-0.7
108,967	+		HMPREF1058_RS01500	0.18	+0.2
109,010	+		HMPREF1058_RS01500	0.29	-2.1
109,011	-		HMPREF1058_RS01500	0.29	-0.9
109,052	+		HMPREF1058_RS01500	0.40	+2.0
109,214	-		HMPREF1058_RS01500	0.82	-3.1
109,322	+				+0.3
109,366	-				+2.8
109,369	-				-0.2
109,398	+				-0.6
109,469	+				-1.4
109,485	-				-1.7
109,485	-				-0.0
109,489	+				-0.6
109,490	-				+0.2
109,498	+				-2.8
109,556	+				-0.7
109,561	+				-1.7
109,562	-				-0.4
109,569	-				-0.6
109,590	+				-0.3
109,622	+		HMPREF1058_RS01495	0.10	+0.2
109,633	+		HMPREF1058_RS01495	0.11	-1.1
109,634	-		HMPREF1058_RS01495	0.11	-0.9
109,787	+		HMPREF1058_RS01495	0.17	-1.6
109,788	-		HMPREF1058_RS01495	0.17	-2.7
109,788	-		HMPREF1058_RS01495	0.17	-2.6
109,887	-		HMPREF1058_RS01495	0.22	-0.8
109,919	+		HMPREF1058_RS01495	0.23	-0.0
109,920	-		HMPREF1058_RS01495	0.23	+3.0
109,941	+		HMPREF1058_RS01495	0.24	-0.5
109,944	-		HMPREF1058_RS01495	0.24	-0.7
109,944	-		HMPREF1058_RS01495	0.24	-0.4
109,972	+		HMPREF1058_RS01495	0.25	-0.0
109,972	+		HMPREF1058_RS01495	0.25	-1.7
109,993	+		HMPREF1058_RS01495	0.26	-0.4
109,994	-		HMPREF1058_RS01495	0.26	-0.4
110,021	+		HMPREF1058_RS01495	0.27	+0.7
110,022	-		HMPREF1058_RS01495	0.27	-1.4
110,022	-		HMPREF1058_RS01495	0.27	-1.1
110,097	-		HMPREF1058_RS01495	0.31	+1.7
110,099	+		HMPREF1058_RS01495	0.31	-2.1
110,100	-		HMPREF1058_RS01495	0.31	+0.3
110,102	-		HMPREF1058_RS01495	0.31	-1.7
110,144	+		HMPREF1058_RS01495	0.33	+1.9
110,145	-		HMPREF1058_RS01495	0.33	+0.3
110,145	-		HMPREF1058_RS01495	0.33	+0.4
110,159	-		HMPREF1058_RS01495	0.33	-1.6