Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01475

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
116,179	+		HMPREF1058_RS01480	0.77	+1.0
116,189	+		HMPREF1058_RS01480	0.77	+2.0
116,306	-		HMPREF1058_RS01480	0.82	-0.3
116,397	+		HMPREF1058_RS01480	0.85	+1.4
116,399	+		HMPREF1058_RS01480	0.85	+0.5
116,440	-		HMPREF1058_RS01480	0.87	-0.7
116,440	-		HMPREF1058_RS01480	0.87	-0.5
116,440	-		HMPREF1058_RS01480	0.87	-0.3
116,448	+		HMPREF1058_RS01480	0.87	-0.2
116,452	-		HMPREF1058_RS01480	0.88	+3.7
116,521	+				+0.4
116,521	+				+0.7
116,522	-				-0.5
116,522	-				+0.5
116,522	-				+1.4
116,522	-				+0.4
116,524	-				-0.1
116,526	-				-0.5
116,642	-				-2.4
116,642	-				-0.0
116,645	-				-0.1
116,794	+				+1.0
116,920	+				-1.2
116,925	-				+0.8
116,925	-				+0.1
117,013	+				-1.8
117,161	+				-0.7
117,164	+				-0.2
117,164	+				+1.0
117,190	-		HMPREF1058_RS01475	0.10	-0.8
117,295	+		HMPREF1058_RS01475	0.61	-1.0
117,295	+		HMPREF1058_RS01475	0.61	-3.3
117,350	-		HMPREF1058_RS01475	0.87	+0.1
117,377	+				+1.7
117,512	+		HMPREF1058_RS01470	0.20	-0.2
117,513	-		HMPREF1058_RS01470	0.20	+2.0
117,513	-		HMPREF1058_RS01470	0.20	-1.2
117,617	-		HMPREF1058_RS01470	0.39	-0.1
117,621	+		HMPREF1058_RS01470	0.39	-1.7
117,662	+		HMPREF1058_RS01470	0.47	+0.4
117,698	+		HMPREF1058_RS01470	0.53	-0.1
117,709	+		HMPREF1058_RS01470	0.55	+0.7
117,711	+		HMPREF1058_RS01470	0.55	+0.6
117,711	+		HMPREF1058_RS01470	0.55	+2.5
117,712	-		HMPREF1058_RS01470	0.56	+0.4
117,733	-		HMPREF1058_RS01470	0.59	+2.0
117,806	-		HMPREF1058_RS01470	0.72	-1.7
117,806	-		HMPREF1058_RS01470	0.72	+2.8
117,832	+		HMPREF1058_RS01470	0.77	+1.0
117,832	+		HMPREF1058_RS01470	0.77	+0.2
117,916	-				+0.3
117,927	+				+1.7
118,113	+				+1.4
118,148	+		HMPREF1058_RS01465	0.10	-1.5
118,152	-		HMPREF1058_RS01465	0.10	-1.8
118,223	+		HMPREF1058_RS01465	0.14	+1.9
118,227	+		HMPREF1058_RS01465	0.15	+1.6
118,239	-		HMPREF1058_RS01465	0.15	+1.7
118,356	-		HMPREF1058_RS01465	0.22	+0.2