Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01465 and HMPREF1058_RS01460 are separated by 124 nucleotides HMPREF1058_RS01460 and HMPREF1058_RS01455 are separated by 2 nucleotides HMPREF1058_RS01455 and HMPREF1058_RS01450 are separated by 24 nucleotides
HMPREF1058_RS01465: HMPREF1058_RS01465 - putative transporter, at 117,979 to 119,667
_RS01465
HMPREF1058_RS01460: HMPREF1058_RS01460 - acyl-CoA carboxylase subunit beta, at 119,792 to 121,324
_RS01460
HMPREF1058_RS01455: HMPREF1058_RS01455 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 121,327 to 121,842
_RS01455
HMPREF1058_RS01450: HMPREF1058_RS01450 - acetyl-CoA carboxylase biotin carboxylase subunit, at 121,867 to 123,378
_RS01450
Position (kb) 119
120
121
122 Strain fitness (log2 ratio) -2
-1
0
1 at 118.819 kb on - strand, within HMPREF1058_RS01465 at 118.869 kb on + strand, within HMPREF1058_RS01465 at 118.874 kb on - strand, within HMPREF1058_RS01465 at 118.966 kb on + strand, within HMPREF1058_RS01465 at 118.966 kb on + strand, within HMPREF1058_RS01465 at 118.991 kb on - strand, within HMPREF1058_RS01465 at 119.094 kb on + strand, within HMPREF1058_RS01465 at 119.095 kb on - strand, within HMPREF1058_RS01465 at 119.163 kb on - strand, within HMPREF1058_RS01465 at 119.188 kb on + strand, within HMPREF1058_RS01465 at 119.189 kb on - strand, within HMPREF1058_RS01465 at 119.198 kb on - strand, within HMPREF1058_RS01465 at 119.320 kb on + strand, within HMPREF1058_RS01465 at 119.611 kb on + strand at 119.667 kb on + strand at 119.667 kb on + strand at 119.668 kb on - strand at 119.804 kb on - strand at 119.872 kb on + strand at 119.967 kb on - strand, within HMPREF1058_RS01460 at 120.102 kb on + strand, within HMPREF1058_RS01460 at 120.132 kb on - strand, within HMPREF1058_RS01460 at 120.152 kb on - strand, within HMPREF1058_RS01460
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 118,819 - HMPREF1058_RS01465 0.50 -0.2 118,869 + HMPREF1058_RS01465 0.53 +1.0 118,874 - HMPREF1058_RS01465 0.53 -1.2 118,966 + HMPREF1058_RS01465 0.58 +1.0 118,966 + HMPREF1058_RS01465 0.58 -1.5 118,991 - HMPREF1058_RS01465 0.60 -0.3 119,094 + HMPREF1058_RS01465 0.66 -0.9 119,095 - HMPREF1058_RS01465 0.66 +0.4 119,163 - HMPREF1058_RS01465 0.70 -2.4 119,188 + HMPREF1058_RS01465 0.72 -1.3 119,189 - HMPREF1058_RS01465 0.72 +0.1 119,198 - HMPREF1058_RS01465 0.72 -1.6 119,320 + HMPREF1058_RS01465 0.79 -1.3 119,611 + -0.0 119,667 + -1.4 119,667 + -0.3 119,668 - -2.7 119,804 - +0.2 119,872 + +1.0 119,967 - HMPREF1058_RS01460 0.11 -1.2 120,102 + HMPREF1058_RS01460 0.20 -1.2 120,132 - HMPREF1058_RS01460 0.22 -1.6 120,152 - HMPREF1058_RS01460 0.23 +0.5
Or see this region's nucleotide sequence