Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01390

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
139,292	+		HMPREF1058_RS01395	0.35	-0.0
139,292	+		HMPREF1058_RS01395	0.35	-0.2
139,292	+		HMPREF1058_RS01395	0.35	-1.0
139,307	-		HMPREF1058_RS01395	0.36	-1.8
139,323	-		HMPREF1058_RS01395	0.37	+0.1
139,431	+		HMPREF1058_RS01395	0.45	-2.6
139,431	+		HMPREF1058_RS01395	0.45	-1.5
139,451	+		HMPREF1058_RS01395	0.46	-1.0
139,456	+		HMPREF1058_RS01395	0.46	-2.9
139,456	+		HMPREF1058_RS01395	0.46	+0.7
139,456	+		HMPREF1058_RS01395	0.46	+1.0
139,467	+		HMPREF1058_RS01395	0.47	+0.2
139,467	+		HMPREF1058_RS01395	0.47	-2.1
139,469	+		HMPREF1058_RS01395	0.47	+0.5
139,470	-		HMPREF1058_RS01395	0.47	+0.2
139,506	+		HMPREF1058_RS01395	0.50	-0.0
139,619	-		HMPREF1058_RS01395	0.57	-0.6
139,622	-		HMPREF1058_RS01395	0.57	-2.2
139,659	+		HMPREF1058_RS01395	0.60	+1.3
139,873	-		HMPREF1058_RS01395	0.74	-2.1
139,875	+		HMPREF1058_RS01395	0.74	-0.5
139,955	+		HMPREF1058_RS01395	0.80	+1.0
139,955	+		HMPREF1058_RS01395	0.80	+4.6
139,956	-		HMPREF1058_RS01395	0.80	+0.9
139,995	-		HMPREF1058_RS01395	0.82	+1.7
140,099	+		HMPREF1058_RS01395	0.89	-2.5
140,165	-				+1.2
140,184	+				-0.2
140,184	+				-0.9
140,276	+				-0.2
140,282	+				-0.6
140,320	+				-1.9
140,381	-		HMPREF1058_RS01390	0.13	-0.5
140,402	+		HMPREF1058_RS01390	0.15	-2.1
140,578	+		HMPREF1058_RS01390	0.33	-1.2
140,590	+		HMPREF1058_RS01390	0.34	+1.1
140,591	-		HMPREF1058_RS01390	0.34	-2.1
140,591	-		HMPREF1058_RS01390	0.34	-2.3
140,597	-				+1.0
140,597	-		HMPREF1058_RS01390	0.34	-3.1
140,697	+		HMPREF1058_RS01390	0.44	+0.4
140,697	+		HMPREF1058_RS01390	0.44	-1.6
140,856	-		HMPREF1058_RS01390	0.60	-0.9
140,858	-		HMPREF1058_RS01390	0.60	-1.7
140,946	-		HMPREF1058_RS01390	0.69	-1.6
140,988	+		HMPREF1058_RS01390	0.73	-2.8
141,068	-		HMPREF1058_RS01390	0.81	-1.1
141,068	-		HMPREF1058_RS01390	0.81	-0.7
141,193	+				-2.1
141,249	-				+1.0
141,418	-		HMPREF1058_RS01385	0.19	-0.8
141,418	-		HMPREF1058_RS01385	0.19	+0.4
141,418	-		HMPREF1058_RS01385	0.19	+1.8
141,537	+		HMPREF1058_RS01385	0.32	+0.1
141,544	-		HMPREF1058_RS01385	0.32	-0.5
141,555	-		HMPREF1058_RS01385	0.34	+2.0
141,621	-		HMPREF1058_RS01385	0.41	-0.0
141,717	-		HMPREF1058_RS01385	0.51	-0.7
141,759	+		HMPREF1058_RS01385	0.56	-0.7
141,759	+		HMPREF1058_RS01385	0.56	+2.4
141,759	+		HMPREF1058_RS01385	0.56	-1.3
141,772	-		HMPREF1058_RS01385	0.57	-1.0
141,789	-		HMPREF1058_RS01385	0.59	+0.2
141,795	+		HMPREF1058_RS01385	0.59	-1.4
141,934	+		HMPREF1058_RS01385	0.74	+0.7
141,935	-		HMPREF1058_RS01385	0.74	+4.6
141,935	-		HMPREF1058_RS01385	0.74	+1.0
142,025	-		HMPREF1058_RS01385	0.84	+0.2
142,042	+		HMPREF1058_RS01385	0.86	-0.7
142,053	+		HMPREF1058_RS01385	0.87	-0.6
142,053	+		HMPREF1058_RS01385	0.87	-0.6
142,063	-		HMPREF1058_RS01385	0.88	+0.3
142,095	+				-1.1
142,110	-				-2.3
142,110	-				-1.7
142,139	+				-0.7
142,178	+				+1.3