Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01210 and HMPREF1058_RS01205 are separated by 181 nucleotides HMPREF1058_RS01205 and HMPREF1058_RS01200 are separated by 80 nucleotides
HMPREF1058_RS01210: HMPREF1058_RS01210 - endopeptidase La, at 178,669 to 181,146
_RS01210
HMPREF1058_RS01205: HMPREF1058_RS01205 - methyltransferase, at 181,328 to 182,032
_RS01205
HMPREF1058_RS01200: HMPREF1058_RS01200 - diacylglycerol kinase family lipid kinase, at 182,113 to 183,147
_RS01200
Position (kb) 181
182
183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand at 180.791 kb on - strand, within HMPREF1058_RS01210 at 180.791 kb on - strand, within HMPREF1058_RS01210 at 180.791 kb on - strand, within HMPREF1058_RS01210 at 180.848 kb on - strand, within HMPREF1058_RS01210 at 180.848 kb on - strand, within HMPREF1058_RS01210 at 180.855 kb on - strand, within HMPREF1058_RS01210 at 180.855 kb on - strand, within HMPREF1058_RS01210 at 180.883 kb on - strand, within HMPREF1058_RS01210 at 180.930 kb on - strand at 180.986 kb on - strand at 181.090 kb on - strand at 181.090 kb on - strand at 181.270 kb on + strand at 181.283 kb on + strand at 181.322 kb on + strand at 181.323 kb on - strand at 181.324 kb on + strand at 181.325 kb on - strand at 181.325 kb on - strand at 181.367 kb on + strand at 181.668 kb on - strand, within HMPREF1058_RS01205 at 181.746 kb on + strand, within HMPREF1058_RS01205 at 181.799 kb on - strand, within HMPREF1058_RS01205 at 181.985 kb on - strand at 181.985 kb on - strand at 181.996 kb on + strand at 181.997 kb on - strand at 181.998 kb on + strand at 181.998 kb on + strand at 182.151 kb on + strand at 182.215 kb on + strand at 182.266 kb on - strand, within HMPREF1058_RS01200
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 180,471 - HMPREF1058_RS01210 0.73 +2.3 180,471 - HMPREF1058_RS01210 0.73 -1.3 180,471 - HMPREF1058_RS01210 0.73 +1.5 180,471 - HMPREF1058_RS01210 0.73 -0.6 180,471 - HMPREF1058_RS01210 0.73 -0.2 180,471 - +0.7 180,791 - HMPREF1058_RS01210 0.86 -0.6 180,791 - HMPREF1058_RS01210 0.86 -0.6 180,791 - HMPREF1058_RS01210 0.86 -0.3 180,848 - HMPREF1058_RS01210 0.88 -0.1 180,848 - HMPREF1058_RS01210 0.88 +2.2 180,855 - HMPREF1058_RS01210 0.88 -1.3 180,855 - HMPREF1058_RS01210 0.88 -0.7 180,883 - HMPREF1058_RS01210 0.89 -0.8 180,930 - -0.0 180,986 - +0.1 181,090 - -3.0 181,090 - +2.3 181,270 + -2.1 181,283 + +0.2 181,322 + +0.8 181,323 - -0.3 181,324 + -0.9 181,325 - -2.2 181,325 - -2.0 181,367 + -1.0 181,668 - HMPREF1058_RS01205 0.48 -0.0 181,746 + HMPREF1058_RS01205 0.59 -2.1 181,799 - HMPREF1058_RS01205 0.67 -1.5 181,985 - +0.4 181,985 - -1.1 181,996 + +1.1 181,997 - +2.3 181,998 + -2.7 181,998 + +2.7 182,151 + +0.8 182,215 + +2.0 182,266 - HMPREF1058_RS01200 0.15 +0.1
Or see this region's nucleotide sequence