Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17550 and HMPREF1058_RS21410 overlap by 8 nucleotides HMPREF1058_RS21410 and HMPREF1058_RS0119340 are separated by 12 nucleotides HMPREF1058_RS0119340 and HMPREF1058_RS17545 are separated by 120 nucleotides HMPREF1058_RS17545 and HMPREF1058_RS0119345 are separated by 6 nucleotides
HMPREF1058_RS17550: HMPREF1058_RS17550 - caspase family protein, at 398,727 to 400,283
_RS17550
HMPREF1058_RS21410: HMPREF1058_RS21410 - hypothetical protein, at 400,276 to 400,413
_RS21410
HMPREF1058_RS0119340: HMPREF1058_RS0119340 - IS1182 family transposase, at 400,426 to 402,080
_RS0119340
HMPREF1058_RS17545: HMPREF1058_RS17545 - hypothetical protein, at 402,201 to 402,674
_RS17545
HMPREF1058_RS0119345: HMPREF1058_RS0119345 - 6-bladed beta-propeller, at 402,681 to 403,445
_RS0119345
Position (kb) 400
401
402
403 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 399.600 kb on + strand, within HMPREF1058_RS17550 at 399.601 kb on - strand, within HMPREF1058_RS17550 at 399.612 kb on + strand, within HMPREF1058_RS17550 at 399.613 kb on - strand, within HMPREF1058_RS17550 at 399.634 kb on - strand, within HMPREF1058_RS17550 at 399.674 kb on + strand, within HMPREF1058_RS17550 at 399.677 kb on - strand, within HMPREF1058_RS17550 at 399.773 kb on + strand, within HMPREF1058_RS17550 at 399.808 kb on + strand, within HMPREF1058_RS17550 at 399.837 kb on - strand, within HMPREF1058_RS17550 at 399.837 kb on - strand, within HMPREF1058_RS17550 at 400.010 kb on - strand, within HMPREF1058_RS17550 at 400.018 kb on - strand, within HMPREF1058_RS17550 at 400.180 kb on + strand at 400.180 kb on + strand at 400.186 kb on + strand at 400.186 kb on + strand at 400.187 kb on - strand at 400.223 kb on + strand at 400.223 kb on + strand at 400.224 kb on - strand at 400.244 kb on + strand at 400.247 kb on - strand at 400.257 kb on - strand at 400.263 kb on + strand at 401.486 kb on - strand, within HMPREF1058_RS0119340 at 401.497 kb on - strand, within HMPREF1058_RS0119340 at 401.497 kb on - strand, within HMPREF1058_RS0119340 at 401.497 kb on - strand, within HMPREF1058_RS0119340 at 401.947 kb on + strand at 402.179 kb on - strand at 402.179 kb on - strand at 402.240 kb on + strand at 402.241 kb on - strand at 402.245 kb on + strand at 402.246 kb on - strand at 402.247 kb on - strand at 402.252 kb on - strand, within HMPREF1058_RS17545 at 402.265 kb on - strand, within HMPREF1058_RS17545 at 402.359 kb on - strand, within HMPREF1058_RS17545 at 402.361 kb on - strand, within HMPREF1058_RS17545 at 402.365 kb on + strand, within HMPREF1058_RS17545 at 402.365 kb on + strand, within HMPREF1058_RS17545 at 402.412 kb on + strand, within HMPREF1058_RS17545 at 402.413 kb on - strand, within HMPREF1058_RS17545 at 402.421 kb on - strand, within HMPREF1058_RS17545 at 402.495 kb on - strand, within HMPREF1058_RS17545 at 402.495 kb on - strand, within HMPREF1058_RS17545 at 402.513 kb on - strand, within HMPREF1058_RS17545 at 402.548 kb on + strand, within HMPREF1058_RS17545 at 402.549 kb on - strand, within HMPREF1058_RS17545 at 402.552 kb on + strand, within HMPREF1058_RS17545 at 402.553 kb on - strand, within HMPREF1058_RS17545 at 402.553 kb on - strand, within HMPREF1058_RS17545 at 402.553 kb on - strand, within HMPREF1058_RS17545 at 402.555 kb on - strand, within HMPREF1058_RS17545 at 402.579 kb on - strand, within HMPREF1058_RS17545 at 402.581 kb on + strand, within HMPREF1058_RS17545 at 402.582 kb on - strand, within HMPREF1058_RS17545 at 402.650 kb on + strand at 402.663 kb on - strand at 402.689 kb on + strand at 402.693 kb on - strand at 402.736 kb on - strand at 402.801 kb on - strand, within HMPREF1058_RS0119345 at 402.801 kb on - strand, within HMPREF1058_RS0119345 at 402.838 kb on - strand, within HMPREF1058_RS0119345 at 402.844 kb on + strand at 402.845 kb on - strand, within HMPREF1058_RS0119345 at 402.845 kb on - strand, within HMPREF1058_RS0119345 at 402.845 kb on - strand, within HMPREF1058_RS0119345 at 402.846 kb on + strand, within HMPREF1058_RS0119345 at 402.900 kb on + strand, within HMPREF1058_RS0119345 at 402.910 kb on - strand, within HMPREF1058_RS0119345 at 402.914 kb on - strand, within HMPREF1058_RS0119345 at 402.923 kb on + strand, within HMPREF1058_RS0119345 at 402.923 kb on + strand, within HMPREF1058_RS0119345 at 402.954 kb on + strand, within HMPREF1058_RS0119345 at 402.966 kb on + strand, within HMPREF1058_RS0119345 at 402.967 kb on - strand, within HMPREF1058_RS0119345 at 403.078 kb on - strand, within HMPREF1058_RS0119345
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 399,600 + HMPREF1058_RS17550 0.56 -2.4 399,601 - HMPREF1058_RS17550 0.56 +0.9 399,612 + HMPREF1058_RS17550 0.57 -0.5 399,613 - HMPREF1058_RS17550 0.57 +3.4 399,634 - HMPREF1058_RS17550 0.58 -1.8 399,674 + HMPREF1058_RS17550 0.61 -0.5 399,677 - HMPREF1058_RS17550 0.61 -1.8 399,773 + HMPREF1058_RS17550 0.67 -2.6 399,808 + HMPREF1058_RS17550 0.69 -2.1 399,837 - HMPREF1058_RS17550 0.71 -0.5 399,837 - HMPREF1058_RS17550 0.71 +0.4 400,010 - HMPREF1058_RS17550 0.82 +0.6 400,018 - HMPREF1058_RS17550 0.83 +1.2 400,180 + -2.2 400,180 + -1.2 400,186 + -1.1 400,186 + -2.8 400,187 - +0.3 400,223 + +1.8 400,223 + -1.5 400,224 - -1.9 400,244 + +1.3 400,247 - -1.0 400,257 - +1.8 400,263 + +0.0 401,486 - HMPREF1058_RS0119340 0.64 -2.1 401,497 - HMPREF1058_RS0119340 0.65 -0.2 401,497 - HMPREF1058_RS0119340 0.65 -2.3 401,497 - HMPREF1058_RS0119340 0.65 -1.3 401,947 + -0.6 402,179 - -2.4 402,179 - -2.5 402,240 + -2.4 402,241 - -1.1 402,245 + -0.3 402,246 - -0.1 402,247 - +0.6 402,252 - HMPREF1058_RS17545 0.11 +0.4 402,265 - HMPREF1058_RS17545 0.14 -0.1 402,359 - HMPREF1058_RS17545 0.33 +0.8 402,361 - HMPREF1058_RS17545 0.34 +1.2 402,365 + HMPREF1058_RS17545 0.35 -0.6 402,365 + HMPREF1058_RS17545 0.35 +2.0 402,412 + HMPREF1058_RS17545 0.45 +1.2 402,413 - HMPREF1058_RS17545 0.45 -1.5 402,421 - HMPREF1058_RS17545 0.46 -0.3 402,495 - HMPREF1058_RS17545 0.62 -2.4 402,495 - HMPREF1058_RS17545 0.62 -0.2 402,513 - HMPREF1058_RS17545 0.66 +2.8 402,548 + HMPREF1058_RS17545 0.73 +0.8 402,549 - HMPREF1058_RS17545 0.73 +1.4 402,552 + HMPREF1058_RS17545 0.74 -1.3 402,553 - HMPREF1058_RS17545 0.74 -4.2 402,553 - HMPREF1058_RS17545 0.74 +1.3 402,553 - HMPREF1058_RS17545 0.74 -0.4 402,555 - HMPREF1058_RS17545 0.75 +1.6 402,579 - HMPREF1058_RS17545 0.80 +0.0 402,581 + HMPREF1058_RS17545 0.80 -1.0 402,582 - HMPREF1058_RS17545 0.80 +1.8 402,650 + +1.1 402,663 - +0.1 402,689 + +0.8 402,693 - +0.3 402,736 - -0.8 402,801 - HMPREF1058_RS0119345 0.16 -1.2 402,801 - HMPREF1058_RS0119345 0.16 +1.6 402,838 - HMPREF1058_RS0119345 0.21 +2.0 402,844 + +2.1 402,845 - HMPREF1058_RS0119345 0.21 +0.0 402,845 - HMPREF1058_RS0119345 0.21 -0.1 402,845 - HMPREF1058_RS0119345 0.21 -0.3 402,846 + HMPREF1058_RS0119345 0.22 +0.6 402,900 + HMPREF1058_RS0119345 0.29 -0.6 402,910 - HMPREF1058_RS0119345 0.30 +1.4 402,914 - HMPREF1058_RS0119345 0.30 -0.8 402,923 + HMPREF1058_RS0119345 0.32 +0.6 402,923 + HMPREF1058_RS0119345 0.32 -2.8 402,954 + HMPREF1058_RS0119345 0.36 -0.8 402,966 + HMPREF1058_RS0119345 0.37 +0.6 402,967 - HMPREF1058_RS0119345 0.37 +1.4 403,078 - HMPREF1058_RS0119345 0.52 +0.9
Or see this region's nucleotide sequence