Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01185 and HMPREF1058_RS01180 are separated by 59 nucleotides HMPREF1058_RS01180 and HMPREF1058_RS01175 are separated by 19 nucleotides
HMPREF1058_RS01185: HMPREF1058_RS01185 - ABC transporter permease, at 185,562 to 187,913
_RS01185
HMPREF1058_RS01180: HMPREF1058_RS01180 - ABC transporter ATP-binding protein, at 187,973 to 188,647
_RS01180
HMPREF1058_RS01175: HMPREF1058_RS01175 - FtsX-like permease family protein, at 188,667 to 191,066
_RS01175
Position (kb) 187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 186.987 kb on + strand, within HMPREF1058_RS01185 at 186.987 kb on + strand, within HMPREF1058_RS01185 at 186.987 kb on + strand, within HMPREF1058_RS01185 at 186.988 kb on - strand, within HMPREF1058_RS01185 at 186.989 kb on + strand, within HMPREF1058_RS01185 at 187.038 kb on - strand, within HMPREF1058_RS01185 at 187.091 kb on - strand, within HMPREF1058_RS01185 at 187.187 kb on - strand, within HMPREF1058_RS01185 at 187.206 kb on + strand, within HMPREF1058_RS01185 at 187.206 kb on + strand, within HMPREF1058_RS01185 at 187.248 kb on + strand, within HMPREF1058_RS01185 at 187.269 kb on + strand, within HMPREF1058_RS01185 at 187.281 kb on + strand, within HMPREF1058_RS01185 at 187.282 kb on - strand, within HMPREF1058_RS01185 at 187.360 kb on - strand, within HMPREF1058_RS01185 at 187.362 kb on - strand, within HMPREF1058_RS01185 at 187.369 kb on - strand, within HMPREF1058_RS01185 at 187.374 kb on - strand, within HMPREF1058_RS01185 at 187.542 kb on + strand, within HMPREF1058_RS01185 at 187.543 kb on - strand, within HMPREF1058_RS01185 at 187.580 kb on + strand, within HMPREF1058_RS01185 at 187.634 kb on + strand, within HMPREF1058_RS01185 at 187.651 kb on + strand, within HMPREF1058_RS01185 at 187.703 kb on + strand at 187.776 kb on - strand at 187.799 kb on + strand at 187.919 kb on + strand at 187.923 kb on - strand at 187.936 kb on + strand at 187.960 kb on - strand at 188.156 kb on + strand, within HMPREF1058_RS01180 at 188.193 kb on - strand, within HMPREF1058_RS01180 at 188.193 kb on - strand, within HMPREF1058_RS01180 at 188.319 kb on + strand, within HMPREF1058_RS01180 at 188.319 kb on + strand, within HMPREF1058_RS01180 at 188.320 kb on - strand, within HMPREF1058_RS01180 at 188.320 kb on - strand, within HMPREF1058_RS01180 at 188.320 kb on - strand at 188.348 kb on + strand, within HMPREF1058_RS01180 at 188.408 kb on + strand, within HMPREF1058_RS01180 at 188.547 kb on - strand, within HMPREF1058_RS01180 at 188.570 kb on + strand, within HMPREF1058_RS01180 at 188.648 kb on - strand at 188.653 kb on + strand at 188.744 kb on + strand at 188.778 kb on + strand at 188.778 kb on + strand at 188.779 kb on - strand at 188.779 kb on - strand at 188.807 kb on - strand at 188.827 kb on - strand at 188.827 kb on - strand at 188.833 kb on - strand at 188.836 kb on + strand at 188.882 kb on + strand at 188.932 kb on - strand, within HMPREF1058_RS01175 at 189.006 kb on - strand, within HMPREF1058_RS01175 at 189.076 kb on + strand, within HMPREF1058_RS01175 at 189.076 kb on + strand, within HMPREF1058_RS01175 at 189.076 kb on + strand, within HMPREF1058_RS01175 at 189.079 kb on - strand, within HMPREF1058_RS01175 at 189.079 kb on - strand, within HMPREF1058_RS01175 at 189.204 kb on + strand, within HMPREF1058_RS01175 at 189.205 kb on - strand, within HMPREF1058_RS01175 at 189.235 kb on - strand at 189.254 kb on + strand, within HMPREF1058_RS01175 at 189.255 kb on - strand, within HMPREF1058_RS01175 at 189.257 kb on - strand, within HMPREF1058_RS01175 at 189.259 kb on - strand, within HMPREF1058_RS01175 at 189.259 kb on - strand, within HMPREF1058_RS01175 at 189.298 kb on + strand, within HMPREF1058_RS01175 at 189.317 kb on - strand, within HMPREF1058_RS01175 at 189.411 kb on + strand, within HMPREF1058_RS01175 at 189.417 kb on + strand, within HMPREF1058_RS01175 at 189.462 kb on + strand, within HMPREF1058_RS01175 at 189.463 kb on - strand, within HMPREF1058_RS01175 at 189.519 kb on - strand, within HMPREF1058_RS01175 at 189.578 kb on + strand, within HMPREF1058_RS01175 at 189.579 kb on - strand, within HMPREF1058_RS01175 at 189.579 kb on - strand, within HMPREF1058_RS01175 at 189.579 kb on - strand, within HMPREF1058_RS01175 at 189.620 kb on + strand, within HMPREF1058_RS01175 at 189.621 kb on - strand, within HMPREF1058_RS01175 at 189.621 kb on - strand, within HMPREF1058_RS01175 at 189.622 kb on + strand, within HMPREF1058_RS01175 at 189.623 kb on - strand, within HMPREF1058_RS01175
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 186,987 + HMPREF1058_RS01185 0.61 -2.3 186,987 + HMPREF1058_RS01185 0.61 +1.5 186,987 + HMPREF1058_RS01185 0.61 +1.2 186,988 - HMPREF1058_RS01185 0.61 -1.4 186,989 + HMPREF1058_RS01185 0.61 -0.6 187,038 - HMPREF1058_RS01185 0.63 -0.3 187,091 - HMPREF1058_RS01185 0.65 +0.2 187,187 - HMPREF1058_RS01185 0.69 -1.8 187,206 + HMPREF1058_RS01185 0.70 -1.6 187,206 + HMPREF1058_RS01185 0.70 -0.6 187,248 + HMPREF1058_RS01185 0.72 +0.8 187,269 + HMPREF1058_RS01185 0.73 +0.8 187,281 + HMPREF1058_RS01185 0.73 +0.9 187,282 - HMPREF1058_RS01185 0.73 -1.4 187,360 - HMPREF1058_RS01185 0.76 +3.0 187,362 - HMPREF1058_RS01185 0.77 -3.0 187,369 - HMPREF1058_RS01185 0.77 -1.7 187,374 - HMPREF1058_RS01185 0.77 -0.0 187,542 + HMPREF1058_RS01185 0.84 +2.0 187,543 - HMPREF1058_RS01185 0.84 +1.5 187,580 + HMPREF1058_RS01185 0.86 +0.2 187,634 + HMPREF1058_RS01185 0.88 -1.7 187,651 + HMPREF1058_RS01185 0.89 -1.8 187,703 + -0.0 187,776 - -0.3 187,799 + -0.5 187,919 + +0.5 187,923 - -0.2 187,936 + -0.5 187,960 - +1.6 188,156 + HMPREF1058_RS01180 0.27 -1.0 188,193 - HMPREF1058_RS01180 0.33 -0.4 188,193 - HMPREF1058_RS01180 0.33 -0.9 188,319 + HMPREF1058_RS01180 0.51 +0.8 188,319 + HMPREF1058_RS01180 0.51 -1.5 188,320 - HMPREF1058_RS01180 0.51 +2.0 188,320 - HMPREF1058_RS01180 0.51 -0.6 188,320 - +1.0 188,348 + HMPREF1058_RS01180 0.56 -2.2 188,408 + HMPREF1058_RS01180 0.64 -2.4 188,547 - HMPREF1058_RS01180 0.85 -1.8 188,570 + HMPREF1058_RS01180 0.88 -0.2 188,648 - -1.1 188,653 + -1.8 188,744 + -1.3 188,778 + +1.0 188,778 + +1.3 188,779 - +0.1 188,779 - -0.6 188,807 - +1.3 188,827 - +0.4 188,827 - -1.0 188,833 - -3.0 188,836 + -0.2 188,882 + -2.0 188,932 - HMPREF1058_RS01175 0.11 +2.1 189,006 - HMPREF1058_RS01175 0.14 +0.4 189,076 + HMPREF1058_RS01175 0.17 +0.6 189,076 + HMPREF1058_RS01175 0.17 +1.6 189,076 + HMPREF1058_RS01175 0.17 +0.8 189,079 - HMPREF1058_RS01175 0.17 -0.5 189,079 - HMPREF1058_RS01175 0.17 -0.8 189,204 + HMPREF1058_RS01175 0.22 -0.3 189,205 - HMPREF1058_RS01175 0.22 -0.9 189,235 - +1.0 189,254 + HMPREF1058_RS01175 0.24 +1.1 189,255 - HMPREF1058_RS01175 0.24 -3.1 189,257 - HMPREF1058_RS01175 0.25 -1.1 189,259 - HMPREF1058_RS01175 0.25 -0.1 189,259 - HMPREF1058_RS01175 0.25 -2.6 189,298 + HMPREF1058_RS01175 0.26 +2.2 189,317 - HMPREF1058_RS01175 0.27 +1.1 189,411 + HMPREF1058_RS01175 0.31 +0.2 189,417 + HMPREF1058_RS01175 0.31 -1.2 189,462 + HMPREF1058_RS01175 0.33 -1.5 189,463 - HMPREF1058_RS01175 0.33 -0.9 189,519 - HMPREF1058_RS01175 0.35 +1.2 189,578 + HMPREF1058_RS01175 0.38 +1.1 189,579 - HMPREF1058_RS01175 0.38 -0.3 189,579 - HMPREF1058_RS01175 0.38 +0.9 189,579 - HMPREF1058_RS01175 0.38 +0.4 189,620 + HMPREF1058_RS01175 0.40 -3.1 189,621 - HMPREF1058_RS01175 0.40 -1.0 189,621 - HMPREF1058_RS01175 0.40 -1.9 189,622 + HMPREF1058_RS01175 0.40 +0.8 189,623 - HMPREF1058_RS01175 0.40 -0.6
Or see this region's nucleotide sequence