Experiment: beta-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17495 and HMPREF1058_RS17490 are separated by 129 nucleotides HMPREF1058_RS17490 and HMPREF1058_RS17485 are separated by 25 nucleotides
HMPREF1058_RS17495: HMPREF1058_RS17495 - DUF4981 domain-containing protein, at 418,483 to 421,674
_RS17495
HMPREF1058_RS17490: HMPREF1058_RS17490 - RagB/SusD family nutrient uptake outer membrane protein, at 421,804 to 423,303
_RS17490
HMPREF1058_RS17485: HMPREF1058_RS17485 - TonB-dependent receptor, at 423,329 to 426,403
_RS17485
Position (kb) 421
422
423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 420.808 kb on - strand, within HMPREF1058_RS17495 at 420.814 kb on + strand, within HMPREF1058_RS17495 at 420.855 kb on + strand, within HMPREF1058_RS17495 at 420.855 kb on + strand, within HMPREF1058_RS17495 at 420.858 kb on - strand at 420.959 kb on + strand, within HMPREF1058_RS17495 at 420.959 kb on + strand, within HMPREF1058_RS17495 at 420.985 kb on - strand, within HMPREF1058_RS17495 at 421.059 kb on + strand, within HMPREF1058_RS17495 at 421.128 kb on + strand, within HMPREF1058_RS17495 at 421.137 kb on + strand, within HMPREF1058_RS17495 at 421.159 kb on - strand, within HMPREF1058_RS17495 at 421.257 kb on + strand, within HMPREF1058_RS17495 at 421.299 kb on + strand, within HMPREF1058_RS17495 at 421.299 kb on + strand, within HMPREF1058_RS17495 at 421.367 kb on + strand at 421.367 kb on + strand at 421.368 kb on - strand at 421.575 kb on + strand at 421.612 kb on + strand at 421.613 kb on - strand at 421.664 kb on + strand at 421.664 kb on + strand at 421.666 kb on + strand at 421.729 kb on + strand at 421.787 kb on + strand at 421.911 kb on + strand at 421.959 kb on + strand, within HMPREF1058_RS17490 at 421.998 kb on + strand, within HMPREF1058_RS17490 at 422.074 kb on + strand, within HMPREF1058_RS17490 at 422.087 kb on + strand, within HMPREF1058_RS17490 at 422.145 kb on - strand, within HMPREF1058_RS17490 at 422.167 kb on - strand, within HMPREF1058_RS17490 at 422.234 kb on + strand, within HMPREF1058_RS17490 at 422.269 kb on + strand, within HMPREF1058_RS17490 at 422.315 kb on - strand, within HMPREF1058_RS17490 at 422.315 kb on - strand, within HMPREF1058_RS17490 at 422.405 kb on + strand at 422.406 kb on - strand, within HMPREF1058_RS17490 at 422.487 kb on + strand, within HMPREF1058_RS17490 at 422.527 kb on - strand, within HMPREF1058_RS17490 at 422.602 kb on - strand, within HMPREF1058_RS17490 at 422.603 kb on + strand, within HMPREF1058_RS17490 at 422.609 kb on + strand, within HMPREF1058_RS17490 at 422.643 kb on - strand, within HMPREF1058_RS17490 at 422.651 kb on + strand, within HMPREF1058_RS17490 at 422.652 kb on - strand, within HMPREF1058_RS17490 at 422.652 kb on - strand, within HMPREF1058_RS17490 at 422.652 kb on - strand, within HMPREF1058_RS17490 at 422.737 kb on - strand, within HMPREF1058_RS17490 at 422.778 kb on + strand, within HMPREF1058_RS17490 at 422.778 kb on + strand, within HMPREF1058_RS17490 at 422.811 kb on + strand, within HMPREF1058_RS17490 at 422.811 kb on + strand, within HMPREF1058_RS17490 at 422.812 kb on - strand, within HMPREF1058_RS17490 at 422.813 kb on + strand, within HMPREF1058_RS17490 at 422.993 kb on - strand, within HMPREF1058_RS17490 at 422.995 kb on - strand, within HMPREF1058_RS17490 at 423.067 kb on - strand, within HMPREF1058_RS17490 at 423.101 kb on + strand, within HMPREF1058_RS17490 at 423.102 kb on - strand, within HMPREF1058_RS17490 at 423.102 kb on - strand, within HMPREF1058_RS17490 at 423.104 kb on + strand, within HMPREF1058_RS17490 at 423.105 kb on - strand, within HMPREF1058_RS17490 at 423.122 kb on + strand, within HMPREF1058_RS17490 at 423.126 kb on - strand, within HMPREF1058_RS17490 at 423.129 kb on + strand, within HMPREF1058_RS17490 at 423.152 kb on - strand, within HMPREF1058_RS17490 at 423.368 kb on - strand at 423.386 kb on + strand at 423.463 kb on - strand at 423.463 kb on - strand at 423.543 kb on - strand at 423.556 kb on + strand at 423.557 kb on - strand at 423.560 kb on + strand at 423.602 kb on + strand at 423.615 kb on - strand at 423.706 kb on - strand, within HMPREF1058_RS17485 at 423.729 kb on + strand, within HMPREF1058_RS17485 at 423.826 kb on + strand, within HMPREF1058_RS17485 at 423.905 kb on - strand, within HMPREF1058_RS17485 at 423.909 kb on + strand, within HMPREF1058_RS17485 at 423.958 kb on - strand, within HMPREF1058_RS17485 at 423.965 kb on - strand, within HMPREF1058_RS17485 at 424.025 kb on - strand, within HMPREF1058_RS17485 at 424.046 kb on - strand, within HMPREF1058_RS17485 at 424.052 kb on - strand, within HMPREF1058_RS17485 at 424.112 kb on - strand, within HMPREF1058_RS17485 at 424.193 kb on - strand, within HMPREF1058_RS17485 at 424.204 kb on - strand, within HMPREF1058_RS17485 at 424.233 kb on + strand, within HMPREF1058_RS17485 at 424.234 kb on - strand, within HMPREF1058_RS17485 at 424.262 kb on - strand, within HMPREF1058_RS17485 at 424.262 kb on - strand, within HMPREF1058_RS17485
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/ml (C) remove 420,808 - HMPREF1058_RS17495 0.73 -0.6 420,814 + HMPREF1058_RS17495 0.73 -1.0 420,855 + HMPREF1058_RS17495 0.74 +3.2 420,855 + HMPREF1058_RS17495 0.74 -1.7 420,858 - +0.9 420,959 + HMPREF1058_RS17495 0.78 -0.8 420,959 + HMPREF1058_RS17495 0.78 +1.1 420,985 - HMPREF1058_RS17495 0.78 +0.6 421,059 + HMPREF1058_RS17495 0.81 +1.3 421,128 + HMPREF1058_RS17495 0.83 -0.8 421,137 + HMPREF1058_RS17495 0.83 -0.9 421,159 - HMPREF1058_RS17495 0.84 -0.1 421,257 + HMPREF1058_RS17495 0.87 -0.9 421,299 + HMPREF1058_RS17495 0.88 -0.3 421,299 + HMPREF1058_RS17495 0.88 +0.6 421,367 + +0.5 421,367 + -0.5 421,368 - +0.5 421,575 + -1.5 421,612 + -1.0 421,613 - -0.3 421,664 + +1.2 421,664 + +1.0 421,666 + -2.8 421,729 + -0.7 421,787 + -1.7 421,911 + -1.0 421,959 + HMPREF1058_RS17490 0.10 -1.8 421,998 + HMPREF1058_RS17490 0.13 -0.3 422,074 + HMPREF1058_RS17490 0.18 +1.3 422,087 + HMPREF1058_RS17490 0.19 +2.9 422,145 - HMPREF1058_RS17490 0.23 +0.9 422,167 - HMPREF1058_RS17490 0.24 +0.3 422,234 + HMPREF1058_RS17490 0.29 +1.2 422,269 + HMPREF1058_RS17490 0.31 +1.3 422,315 - HMPREF1058_RS17490 0.34 -0.1 422,315 - HMPREF1058_RS17490 0.34 +0.6 422,405 + +1.9 422,406 - HMPREF1058_RS17490 0.40 +1.5 422,487 + HMPREF1058_RS17490 0.46 +0.8 422,527 - HMPREF1058_RS17490 0.48 +0.2 422,602 - HMPREF1058_RS17490 0.53 +0.2 422,603 + HMPREF1058_RS17490 0.53 -1.9 422,609 + HMPREF1058_RS17490 0.54 -0.8 422,643 - HMPREF1058_RS17490 0.56 -0.8 422,651 + HMPREF1058_RS17490 0.56 -0.2 422,652 - HMPREF1058_RS17490 0.57 +0.4 422,652 - HMPREF1058_RS17490 0.57 -2.3 422,652 - HMPREF1058_RS17490 0.57 +0.8 422,737 - HMPREF1058_RS17490 0.62 +0.1 422,778 + HMPREF1058_RS17490 0.65 -1.2 422,778 + HMPREF1058_RS17490 0.65 -1.5 422,811 + HMPREF1058_RS17490 0.67 +1.3 422,811 + HMPREF1058_RS17490 0.67 -0.1 422,812 - HMPREF1058_RS17490 0.67 +1.7 422,813 + HMPREF1058_RS17490 0.67 -1.5 422,993 - HMPREF1058_RS17490 0.79 +1.1 422,995 - HMPREF1058_RS17490 0.79 -2.6 423,067 - HMPREF1058_RS17490 0.84 -0.1 423,101 + HMPREF1058_RS17490 0.86 +1.6 423,102 - HMPREF1058_RS17490 0.87 -0.4 423,102 - HMPREF1058_RS17490 0.87 +1.7 423,104 + HMPREF1058_RS17490 0.87 +0.5 423,105 - HMPREF1058_RS17490 0.87 -0.7 423,122 + HMPREF1058_RS17490 0.88 -0.8 423,126 - HMPREF1058_RS17490 0.88 +0.1 423,129 + HMPREF1058_RS17490 0.88 +0.1 423,152 - HMPREF1058_RS17490 0.90 -0.6 423,368 - +0.3 423,386 + -0.2 423,463 - -0.4 423,463 - -0.9 423,543 - +1.1 423,556 + -0.4 423,557 - -0.2 423,560 + -0.6 423,602 + +0.3 423,615 - +0.3 423,706 - HMPREF1058_RS17485 0.12 -0.8 423,729 + HMPREF1058_RS17485 0.13 +0.1 423,826 + HMPREF1058_RS17485 0.16 -1.6 423,905 - HMPREF1058_RS17485 0.19 -0.8 423,909 + HMPREF1058_RS17485 0.19 +0.1 423,958 - HMPREF1058_RS17485 0.20 -0.8 423,965 - HMPREF1058_RS17485 0.21 -0.1 424,025 - HMPREF1058_RS17485 0.23 -0.7 424,046 - HMPREF1058_RS17485 0.23 -1.3 424,052 - HMPREF1058_RS17485 0.24 +0.0 424,112 - HMPREF1058_RS17485 0.25 -1.1 424,193 - HMPREF1058_RS17485 0.28 -1.7 424,204 - HMPREF1058_RS17485 0.28 +2.2 424,233 + HMPREF1058_RS17485 0.29 -1.3 424,234 - HMPREF1058_RS17485 0.29 +0.4 424,262 - HMPREF1058_RS17485 0.30 -0.4 424,262 - HMPREF1058_RS17485 0.30 +0.7
Or see this region's nucleotide sequence