Experiment: beta-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15500 and HMPREF1058_RS15495 are separated by 258 nucleotides HMPREF1058_RS15495 and HMPREF1058_RS15490 are separated by 69 nucleotides
HMPREF1058_RS15500: HMPREF1058_RS15500 - YgiQ family radical SAM protein, at 902,261 to 904,150
_RS15500
HMPREF1058_RS15495: HMPREF1058_RS15495 - sodium-translocating pyrophosphatase, at 904,409 to 906,613
_RS15495
HMPREF1058_RS15490: HMPREF1058_RS15490 - SWIM zinc finger family protein, at 906,683 to 908,458
_RS15490
Position (kb) 904
905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 903.419 kb on + strand, within HMPREF1058_RS15500 at 903.419 kb on + strand, within HMPREF1058_RS15500 at 903.419 kb on + strand, within HMPREF1058_RS15500 at 903.420 kb on - strand, within HMPREF1058_RS15500 at 903.420 kb on - strand, within HMPREF1058_RS15500 at 903.420 kb on - strand, within HMPREF1058_RS15500 at 903.485 kb on - strand, within HMPREF1058_RS15500 at 903.589 kb on - strand, within HMPREF1058_RS15500 at 903.603 kb on + strand, within HMPREF1058_RS15500 at 903.640 kb on + strand, within HMPREF1058_RS15500 at 903.710 kb on - strand, within HMPREF1058_RS15500 at 903.789 kb on + strand, within HMPREF1058_RS15500 at 903.794 kb on - strand, within HMPREF1058_RS15500 at 903.822 kb on + strand, within HMPREF1058_RS15500 at 903.823 kb on - strand, within HMPREF1058_RS15500 at 903.827 kb on + strand, within HMPREF1058_RS15500 at 903.828 kb on - strand, within HMPREF1058_RS15500 at 903.834 kb on + strand, within HMPREF1058_RS15500 at 903.918 kb on + strand, within HMPREF1058_RS15500 at 903.929 kb on - strand, within HMPREF1058_RS15500 at 903.948 kb on + strand, within HMPREF1058_RS15500 at 903.949 kb on - strand, within HMPREF1058_RS15500 at 903.986 kb on - strand at 903.986 kb on - strand at 904.101 kb on + strand at 904.135 kb on + strand at 904.135 kb on + strand at 904.136 kb on - strand at 904.172 kb on - strand at 904.172 kb on - strand at 904.217 kb on - strand at 904.253 kb on + strand at 904.269 kb on + strand at 904.280 kb on - strand at 904.280 kb on - strand at 904.280 kb on - strand at 904.341 kb on + strand at 904.341 kb on + strand at 904.370 kb on + strand at 904.401 kb on + strand at 904.418 kb on + strand at 904.418 kb on + strand at 904.423 kb on - strand at 904.473 kb on - strand at 904.478 kb on + strand at 904.479 kb on - strand at 904.535 kb on + strand at 904.610 kb on - strand at 904.731 kb on - strand, within HMPREF1058_RS15495 at 904.731 kb on - strand, within HMPREF1058_RS15495 at 904.731 kb on - strand, within HMPREF1058_RS15495 at 904.863 kb on + strand, within HMPREF1058_RS15495 at 904.863 kb on + strand, within HMPREF1058_RS15495 at 904.863 kb on + strand, within HMPREF1058_RS15495 at 904.863 kb on + strand, within HMPREF1058_RS15495 at 904.863 kb on + strand, within HMPREF1058_RS15495 at 904.915 kb on - strand, within HMPREF1058_RS15495 at 904.915 kb on - strand, within HMPREF1058_RS15495 at 904.997 kb on + strand, within HMPREF1058_RS15495 at 904.998 kb on - strand, within HMPREF1058_RS15495 at 905.017 kb on - strand, within HMPREF1058_RS15495 at 905.017 kb on - strand, within HMPREF1058_RS15495 at 905.035 kb on + strand, within HMPREF1058_RS15495 at 905.109 kb on + strand, within HMPREF1058_RS15495 at 905.110 kb on - strand, within HMPREF1058_RS15495 at 905.110 kb on - strand, within HMPREF1058_RS15495 at 905.227 kb on + strand, within HMPREF1058_RS15495 at 905.245 kb on + strand, within HMPREF1058_RS15495 at 905.246 kb on - strand, within HMPREF1058_RS15495 at 905.246 kb on - strand, within HMPREF1058_RS15495 at 905.279 kb on - strand, within HMPREF1058_RS15495 at 905.457 kb on + strand, within HMPREF1058_RS15495 at 905.460 kb on + strand, within HMPREF1058_RS15495 at 905.468 kb on - strand, within HMPREF1058_RS15495 at 905.492 kb on + strand, within HMPREF1058_RS15495 at 905.497 kb on + strand, within HMPREF1058_RS15495 at 905.510 kb on + strand, within HMPREF1058_RS15495 at 905.510 kb on + strand, within HMPREF1058_RS15495 at 905.588 kb on - strand, within HMPREF1058_RS15495 at 905.622 kb on + strand, within HMPREF1058_RS15495 at 905.675 kb on - strand, within HMPREF1058_RS15495 at 905.690 kb on + strand, within HMPREF1058_RS15495 at 905.691 kb on - strand, within HMPREF1058_RS15495 at 905.927 kb on + strand, within HMPREF1058_RS15495 at 905.927 kb on + strand, within HMPREF1058_RS15495 at 905.927 kb on + strand, within HMPREF1058_RS15495 at 905.928 kb on - strand, within HMPREF1058_RS15495 at 905.931 kb on + strand, within HMPREF1058_RS15495 at 905.982 kb on + strand, within HMPREF1058_RS15495 at 906.000 kb on + strand, within HMPREF1058_RS15495 at 906.029 kb on + strand, within HMPREF1058_RS15495 at 906.030 kb on - strand, within HMPREF1058_RS15495 at 906.038 kb on + strand, within HMPREF1058_RS15495 at 906.049 kb on - strand, within HMPREF1058_RS15495 at 906.095 kb on - strand, within HMPREF1058_RS15495 at 906.274 kb on - strand, within HMPREF1058_RS15495 at 906.354 kb on + strand, within HMPREF1058_RS15495 at 906.458 kb on - strand at 906.520 kb on + strand at 906.779 kb on + strand at 906.779 kb on + strand at 906.780 kb on - strand at 906.784 kb on + strand at 906.784 kb on + strand at 906.800 kb on + strand at 906.812 kb on - strand at 906.849 kb on + strand at 906.850 kb on - strand at 906.868 kb on + strand, within HMPREF1058_RS15490 at 906.870 kb on + strand, within HMPREF1058_RS15490 at 906.872 kb on + strand, within HMPREF1058_RS15490 at 906.872 kb on + strand, within HMPREF1058_RS15490 at 906.873 kb on - strand, within HMPREF1058_RS15490 at 906.873 kb on - strand, within HMPREF1058_RS15490 at 906.873 kb on - strand, within HMPREF1058_RS15490 at 906.875 kb on - strand, within HMPREF1058_RS15490 at 906.875 kb on - strand, within HMPREF1058_RS15490 at 906.909 kb on + strand, within HMPREF1058_RS15490 at 906.910 kb on - strand, within HMPREF1058_RS15490 at 906.919 kb on - strand, within HMPREF1058_RS15490 at 907.066 kb on + strand, within HMPREF1058_RS15490 at 907.067 kb on - strand, within HMPREF1058_RS15490 at 907.123 kb on - strand, within HMPREF1058_RS15490 at 907.123 kb on - strand, within HMPREF1058_RS15490 at 907.172 kb on + strand, within HMPREF1058_RS15490 at 907.194 kb on - strand, within HMPREF1058_RS15490 at 907.205 kb on - strand, within HMPREF1058_RS15490 at 907.407 kb on - strand, within HMPREF1058_RS15490 at 907.440 kb on + strand, within HMPREF1058_RS15490 at 907.545 kb on - strand, within HMPREF1058_RS15490 at 907.574 kb on - strand, within HMPREF1058_RS15490 at 907.607 kb on + strand, within HMPREF1058_RS15490
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/ml (C) remove 903,419 + HMPREF1058_RS15500 0.61 -1.9 903,419 + HMPREF1058_RS15500 0.61 -2.2 903,419 + HMPREF1058_RS15500 0.61 +0.9 903,420 - HMPREF1058_RS15500 0.61 -1.6 903,420 - HMPREF1058_RS15500 0.61 -1.3 903,420 - HMPREF1058_RS15500 0.61 +0.8 903,485 - HMPREF1058_RS15500 0.65 +1.6 903,589 - HMPREF1058_RS15500 0.70 -1.1 903,603 + HMPREF1058_RS15500 0.71 +0.7 903,640 + HMPREF1058_RS15500 0.73 +0.7 903,710 - HMPREF1058_RS15500 0.77 +0.5 903,789 + HMPREF1058_RS15500 0.81 +1.2 903,794 - HMPREF1058_RS15500 0.81 -0.7 903,822 + HMPREF1058_RS15500 0.83 +0.3 903,823 - HMPREF1058_RS15500 0.83 -1.5 903,827 + HMPREF1058_RS15500 0.83 +0.6 903,828 - HMPREF1058_RS15500 0.83 +1.5 903,834 + HMPREF1058_RS15500 0.83 +1.2 903,918 + HMPREF1058_RS15500 0.88 +1.3 903,929 - HMPREF1058_RS15500 0.88 -1.2 903,948 + HMPREF1058_RS15500 0.89 +1.0 903,949 - HMPREF1058_RS15500 0.89 -0.6 903,986 - -0.3 903,986 - -0.7 904,101 + -1.0 904,135 + +1.7 904,135 + -0.2 904,136 - +2.1 904,172 - +1.1 904,172 - -0.2 904,217 - +1.1 904,253 + +1.1 904,269 + -0.7 904,280 - -0.5 904,280 - -0.3 904,280 - -0.2 904,341 + -0.3 904,341 + -1.2 904,370 + -1.3 904,401 + +0.6 904,418 + +2.5 904,418 + +1.6 904,423 - +2.0 904,473 - +1.4 904,478 + +0.5 904,479 - +2.6 904,535 + -0.9 904,610 - +0.9 904,731 - HMPREF1058_RS15495 0.15 +1.7 904,731 - HMPREF1058_RS15495 0.15 +1.6 904,731 - HMPREF1058_RS15495 0.15 +0.4 904,863 + HMPREF1058_RS15495 0.21 +2.8 904,863 + HMPREF1058_RS15495 0.21 +1.2 904,863 + HMPREF1058_RS15495 0.21 +1.3 904,863 + HMPREF1058_RS15495 0.21 +2.9 904,863 + HMPREF1058_RS15495 0.21 +3.9 904,915 - HMPREF1058_RS15495 0.23 +0.5 904,915 - HMPREF1058_RS15495 0.23 +1.5 904,997 + HMPREF1058_RS15495 0.27 +1.7 904,998 - HMPREF1058_RS15495 0.27 +0.3 905,017 - HMPREF1058_RS15495 0.28 +1.4 905,017 - HMPREF1058_RS15495 0.28 +1.2 905,035 + HMPREF1058_RS15495 0.28 +1.0 905,109 + HMPREF1058_RS15495 0.32 +0.6 905,110 - HMPREF1058_RS15495 0.32 +1.4 905,110 - HMPREF1058_RS15495 0.32 +1.3 905,227 + HMPREF1058_RS15495 0.37 +1.4 905,245 + HMPREF1058_RS15495 0.38 -0.5 905,246 - HMPREF1058_RS15495 0.38 +2.5 905,246 - HMPREF1058_RS15495 0.38 +0.8 905,279 - HMPREF1058_RS15495 0.39 +0.1 905,457 + HMPREF1058_RS15495 0.48 +0.5 905,460 + HMPREF1058_RS15495 0.48 +1.0 905,468 - HMPREF1058_RS15495 0.48 +0.1 905,492 + HMPREF1058_RS15495 0.49 +1.0 905,497 + HMPREF1058_RS15495 0.49 +0.4 905,510 + HMPREF1058_RS15495 0.50 +0.6 905,510 + HMPREF1058_RS15495 0.50 +1.1 905,588 - HMPREF1058_RS15495 0.53 +1.5 905,622 + HMPREF1058_RS15495 0.55 +1.3 905,675 - HMPREF1058_RS15495 0.57 -1.3 905,690 + HMPREF1058_RS15495 0.58 +2.0 905,691 - HMPREF1058_RS15495 0.58 -0.4 905,927 + HMPREF1058_RS15495 0.69 +2.8 905,927 + HMPREF1058_RS15495 0.69 +1.5 905,927 + HMPREF1058_RS15495 0.69 +1.3 905,928 - HMPREF1058_RS15495 0.69 +2.1 905,931 + HMPREF1058_RS15495 0.69 -0.3 905,982 + HMPREF1058_RS15495 0.71 -0.5 906,000 + HMPREF1058_RS15495 0.72 +1.7 906,029 + HMPREF1058_RS15495 0.73 +2.0 906,030 - HMPREF1058_RS15495 0.74 +1.5 906,038 + HMPREF1058_RS15495 0.74 +0.6 906,049 - HMPREF1058_RS15495 0.74 +0.3 906,095 - HMPREF1058_RS15495 0.76 +1.0 906,274 - HMPREF1058_RS15495 0.85 -0.1 906,354 + HMPREF1058_RS15495 0.88 -0.1 906,458 - +0.9 906,520 + +2.5 906,779 + -2.6 906,779 + +0.7 906,780 - -0.4 906,784 + -0.9 906,784 + +2.8 906,800 + -1.4 906,812 - -0.1 906,849 + -1.5 906,850 - -0.3 906,868 + HMPREF1058_RS15490 0.10 -2.0 906,870 + HMPREF1058_RS15490 0.11 -0.1 906,872 + HMPREF1058_RS15490 0.11 -1.7 906,872 + HMPREF1058_RS15490 0.11 +0.6 906,873 - HMPREF1058_RS15490 0.11 -0.8 906,873 - HMPREF1058_RS15490 0.11 +0.5 906,873 - HMPREF1058_RS15490 0.11 -0.9 906,875 - HMPREF1058_RS15490 0.11 -0.0 906,875 - HMPREF1058_RS15490 0.11 -2.6 906,909 + HMPREF1058_RS15490 0.13 -3.7 906,910 - HMPREF1058_RS15490 0.13 -2.0 906,919 - HMPREF1058_RS15490 0.13 -0.3 907,066 + HMPREF1058_RS15490 0.22 -0.8 907,067 - HMPREF1058_RS15490 0.22 +0.4 907,123 - HMPREF1058_RS15490 0.25 -1.8 907,123 - HMPREF1058_RS15490 0.25 +0.4 907,172 + HMPREF1058_RS15490 0.28 +1.5 907,194 - HMPREF1058_RS15490 0.29 +0.3 907,205 - HMPREF1058_RS15490 0.29 -1.0 907,407 - HMPREF1058_RS15490 0.41 -0.7 907,440 + HMPREF1058_RS15490 0.43 +3.1 907,545 - HMPREF1058_RS15490 0.49 -2.8 907,574 - HMPREF1058_RS15490 0.50 -0.8 907,607 + HMPREF1058_RS15490 0.52 +0.7
Or see this region's nucleotide sequence