Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14690

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	beta-Cyclodextrin 2.5 mg/ml (C)
1,130,214	+				+0.4
1,130,215	-				-0.2
1,130,229	-				+0.8
1,130,312	-				+1.4
1,130,354	-				+0.8
1,130,385	-				-1.2
1,130,394	-				-1.7
1,130,402	+				+0.9
1,130,403	-				-0.6
1,130,403	-				-2.5
1,130,403	-				-1.8
1,130,423	-				-1.5
1,130,510	-				-3.9
1,130,569	+		HMPREF1058_RS14690	0.10	-1.9
1,130,594	+		HMPREF1058_RS14690	0.13	-2.9
1,130,619	+		HMPREF1058_RS14690	0.15	-2.9
1,130,619	+		HMPREF1058_RS14690	0.15	-0.9
1,130,622	+		HMPREF1058_RS14690	0.16	-2.4
1,130,622	+		HMPREF1058_RS14690	0.16	-1.7
1,130,626	-		HMPREF1058_RS14690	0.16	-2.6
1,130,633	-		HMPREF1058_RS14690	0.17	-4.1
1,130,633	-		HMPREF1058_RS14690	0.17	-1.2
1,130,661	-		HMPREF1058_RS14690	0.20	-0.9
1,130,704	+		HMPREF1058_RS14690	0.24	-4.8
1,130,734	+		HMPREF1058_RS14690	0.27	-1.0
1,130,752	+		HMPREF1058_RS14690	0.29	-1.3
1,130,765	-		HMPREF1058_RS14690	0.31	-1.7
1,130,765	-		HMPREF1058_RS14690	0.31	-1.2
1,130,765	-		HMPREF1058_RS14690	0.31	-1.2
1,130,788	+		HMPREF1058_RS14690	0.33	-3.5
1,130,795	+		HMPREF1058_RS14690	0.34	-2.0
1,130,800	+		HMPREF1058_RS14690	0.34	-2.5
1,130,822	-		HMPREF1058_RS14690	0.36	-2.7
1,130,824	-		HMPREF1058_RS14690	0.37	-3.3
1,130,888	-		HMPREF1058_RS14690	0.43	-2.1
1,130,888	-		HMPREF1058_RS14690	0.43	-3.2
1,130,929	+		HMPREF1058_RS14690	0.48	-1.6
1,130,946	-		HMPREF1058_RS14690	0.49	-2.0
1,130,968	+		HMPREF1058_RS14690	0.52	-1.7
1,130,974	+		HMPREF1058_RS14690	0.52	-4.1
1,130,975	-		HMPREF1058_RS14690	0.52	-0.6
1,130,975	-		HMPREF1058_RS14690	0.52	-2.2
1,130,981	-		HMPREF1058_RS14690	0.53	-0.3
1,130,981	-		HMPREF1058_RS14690	0.53	-1.6
1,131,002	+		HMPREF1058_RS14690	0.55	-2.8
1,131,134	+		HMPREF1058_RS14690	0.69	-2.8
1,131,160	+		HMPREF1058_RS14690	0.72	-3.3
1,131,161	-		HMPREF1058_RS14690	0.72	+1.4
1,131,174	-		HMPREF1058_RS14690	0.73	-1.5
1,131,250	+				-0.9
1,131,251	-		HMPREF1058_RS14690	0.81	+2.4
1,131,251	-		HMPREF1058_RS14690	0.81	-3.2
1,131,285	-				-0.9
1,131,290	-		HMPREF1058_RS14690	0.85	-1.6
1,131,309	+		HMPREF1058_RS14690	0.87	-0.6
1,131,389	-				-0.8
1,131,455	+				-2.3
1,131,456	-				+0.9
1,131,560	+				-1.7
1,131,561	-				-0.0
1,131,633	-		HMPREF1058_RS14685	0.12	+0.6
1,131,694	+		HMPREF1058_RS14685	0.15	-1.1
1,131,695	-		HMPREF1058_RS14685	0.15	-0.4
1,131,695	-		HMPREF1058_RS14685	0.15	+0.3
1,131,695	-		HMPREF1058_RS14685	0.15	+0.8
1,131,764	+		HMPREF1058_RS14685	0.19	-2.3
1,131,818	+		HMPREF1058_RS14685	0.22	-2.5
1,131,818	+		HMPREF1058_RS14685	0.22	-1.8
1,131,818	+		HMPREF1058_RS14685	0.22	-2.3
1,131,881	+		HMPREF1058_RS14685	0.25	-3.1
1,131,915	-		HMPREF1058_RS14685	0.27	-0.5
1,132,151	+		HMPREF1058_RS14685	0.40	-2.1
1,132,190	+		HMPREF1058_RS14685	0.42	-2.1
1,132,227	-		HMPREF1058_RS14685	0.44	+0.3
1,132,229	+		HMPREF1058_RS14685	0.44	-2.2
1,132,300	-		HMPREF1058_RS14685	0.48	-2.9
1,132,358	+		HMPREF1058_RS14685	0.51	-3.0
1,132,404	+		HMPREF1058_RS14685	0.54	-2.8