Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14470

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	beta-Cyclodextrin 2.5 mg/ml (C)
1,192,114	+		HMPREF1058_RS14480	0.84	-0.3
1,192,275	+				+0.9
1,192,291	-				-0.8
1,192,294	+				-2.5
1,192,296	+				-1.2
1,192,297	-				-1.7
1,192,372	+		HMPREF1058_RS14475	0.12	-0.8
1,192,372	+		HMPREF1058_RS14475	0.12	-0.2
1,192,372	+		HMPREF1058_RS14475	0.12	-2.2
1,192,374	+		HMPREF1058_RS14475	0.12	-0.9
1,192,375	-		HMPREF1058_RS14475	0.12	-1.5
1,192,390	+				-1.0
1,192,441	+		HMPREF1058_RS14475	0.22	-0.9
1,192,457	-		HMPREF1058_RS14475	0.24	-0.5
1,192,462	+		HMPREF1058_RS14475	0.25	-3.9
1,192,463	-		HMPREF1058_RS14475	0.25	-0.5
1,192,507	-		HMPREF1058_RS14475	0.31	+0.8
1,192,528	+		HMPREF1058_RS14475	0.34	-2.1
1,192,566	+		HMPREF1058_RS14475	0.39	-1.4
1,192,619	-		HMPREF1058_RS14475	0.47	-0.2
1,192,619	-		HMPREF1058_RS14475	0.47	-1.3
1,192,621	+		HMPREF1058_RS14475	0.47	-2.7
1,192,664	-		HMPREF1058_RS14475	0.53	-2.7
1,192,676	-		HMPREF1058_RS14475	0.55	+0.4
1,192,792	+		HMPREF1058_RS14475	0.71	-2.3
1,192,792	+		HMPREF1058_RS14475	0.71	-2.4
1,192,874	+		HMPREF1058_RS14475	0.83	-1.1
1,192,875	-		HMPREF1058_RS14475	0.83	-1.3
1,192,883	+		HMPREF1058_RS14475	0.84	-1.1
1,192,923	+				-0.3
1,192,923	+				-2.4
1,192,974	-				+0.0
1,192,978	-				-0.6
1,192,978	-				-0.0
1,192,996	+				-2.4
1,192,996	+				-0.7
1,192,997	-				-3.3
1,193,002	+				+1.2
1,193,016	-				-0.7
1,193,016	-				+1.7
1,193,088	+				-2.7
1,193,138	-		HMPREF1058_RS14470	0.12	-2.3
1,193,172	+		HMPREF1058_RS14470	0.15	-3.2
1,193,194	+		HMPREF1058_RS14470	0.18	-1.5
1,193,194	+		HMPREF1058_RS14470	0.18	-1.2
1,193,195	-		HMPREF1058_RS14470	0.18	-2.2
1,193,197	-		HMPREF1058_RS14470	0.18	-1.5
1,193,197	-		HMPREF1058_RS14470	0.18	+0.5
1,193,197	-		HMPREF1058_RS14470	0.18	-1.3
1,193,197	-		HMPREF1058_RS14470	0.18	-1.8
1,193,198	+		HMPREF1058_RS14470	0.18	-2.7
1,193,198	+		HMPREF1058_RS14470	0.18	-2.3
1,193,198	+		HMPREF1058_RS14470	0.18	-1.1
1,193,198	+		HMPREF1058_RS14470	0.18	-1.8
1,193,198	+		HMPREF1058_RS14470	0.18	-3.1
1,193,198	+		HMPREF1058_RS14470	0.18	-3.0
1,193,199	-		HMPREF1058_RS14470	0.18	-0.5
1,193,199	-		HMPREF1058_RS14470	0.18	-0.5
1,193,199	-		HMPREF1058_RS14470	0.18	-2.7
1,193,199	-		HMPREF1058_RS14470	0.18	-4.7
1,193,199	-		HMPREF1058_RS14470	0.18	-4.2
1,193,199	-		HMPREF1058_RS14470	0.18	-3.8
1,193,199	-		HMPREF1058_RS14470	0.18	-2.5
1,193,199	-		HMPREF1058_RS14470	0.18	-0.0
1,193,202	+		HMPREF1058_RS14470	0.18	-1.7
1,193,203	-		HMPREF1058_RS14470	0.19	-3.5
1,193,228	+		HMPREF1058_RS14470	0.21	-1.4
1,193,230	+		HMPREF1058_RS14470	0.21	-1.5
1,193,230	+		HMPREF1058_RS14470	0.21	-2.2
1,193,231	-		HMPREF1058_RS14470	0.21	-2.2
1,193,231	-		HMPREF1058_RS14470	0.21	-2.8
1,193,231	-		HMPREF1058_RS14470	0.21	-2.7
1,193,305	-		HMPREF1058_RS14470	0.29	-1.6
1,193,344	-		HMPREF1058_RS14470	0.33	-2.2
1,193,379	+		HMPREF1058_RS14470	0.36	-1.3
1,193,385	+		HMPREF1058_RS14470	0.37	-2.7
1,193,390	-		HMPREF1058_RS14470	0.37	-0.4
1,193,463	+		HMPREF1058_RS14470	0.45	-4.5
1,193,464	-		HMPREF1058_RS14470	0.45	-0.8
1,193,499	-		HMPREF1058_RS14470	0.48	-2.0
1,193,499	-		HMPREF1058_RS14470	0.48	-2.5
1,193,499	-		HMPREF1058_RS14470	0.48	-2.6
1,193,501	+		HMPREF1058_RS14470	0.48	-3.1
1,193,502	-		HMPREF1058_RS14470	0.48	-1.8
1,193,514	-		HMPREF1058_RS14470	0.50	-1.1
1,193,515	+		HMPREF1058_RS14470	0.50	-3.6
1,193,535	+		HMPREF1058_RS14470	0.52	-1.3
1,193,537	+		HMPREF1058_RS14470	0.52	-3.1
1,193,537	+		HMPREF1058_RS14470	0.52	-3.3
1,193,537	+		HMPREF1058_RS14470	0.52	-4.0
1,193,548	-		HMPREF1058_RS14470	0.53	-2.0
1,193,563	-		HMPREF1058_RS14470	0.54	-3.6
1,193,600	-		HMPREF1058_RS14470	0.58	-2.2
1,193,631	+		HMPREF1058_RS14470	0.61	-2.3
1,193,631	+		HMPREF1058_RS14470	0.61	-3.7
1,193,632	-		HMPREF1058_RS14470	0.61	-1.7
1,193,632	-		HMPREF1058_RS14470	0.61	-2.6
1,193,748	-		HMPREF1058_RS14470	0.73	-1.3
1,193,769	+		HMPREF1058_RS14470	0.75	-2.1
1,193,804	-		HMPREF1058_RS14470	0.79	-2.7
1,193,871	+		HMPREF1058_RS14470	0.85	-3.8
1,193,885	+		HMPREF1058_RS14470	0.87	-2.7
1,193,886	-		HMPREF1058_RS14470	0.87	-2.0
1,193,886	-		HMPREF1058_RS14470	0.87	-2.1
1,193,920	+				-2.7
1,193,921	-				-0.7
1,193,986	+				-3.9
1,193,986	+				-1.8
1,193,986	+				+1.3
1,193,995	+				-3.1
1,194,003	+				-0.3
1,194,021	-				-0.6
1,194,061	-				+1.4
1,194,061	-				+0.5
1,194,061	-				+1.3
1,194,138	-		HMPREF1058_RS14465	0.13	+1.0
1,194,232	+		HMPREF1058_RS14465	0.24	+0.3
1,194,233	-		HMPREF1058_RS14465	0.24	-0.3
1,194,308	+		HMPREF1058_RS14465	0.33	-1.5
1,194,309	-		HMPREF1058_RS14465	0.33	-0.9
1,194,314	-		HMPREF1058_RS14465	0.34	+1.9
1,194,404	-		HMPREF1058_RS14465	0.44	+0.9
1,194,404	-		HMPREF1058_RS14465	0.44	-1.5
1,194,406	-		HMPREF1058_RS14465	0.44	+0.7
1,194,435	+		HMPREF1058_RS14465	0.48	-2.0
1,194,521	+		HMPREF1058_RS14465	0.58	+1.2
1,194,595	+		HMPREF1058_RS14465	0.66	-0.3
1,194,772	+		HMPREF1058_RS14465	0.87	+0.3
1,194,847	+				-1.3
1,194,877	-				+0.7
1,194,899	-				+0.7
1,194,932	-				+2.0
1,194,977	-				+0.4
1,194,997	-				-1.3