Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS09370

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	beta-Cyclodextrin 2.5 mg/ml (C)
896,180	+				+3.2
896,195	+				+0.6
896,205	+				+0.7
896,209	+				+0.5
896,209	+				+0.1
896,209	+				+1.1
896,254	+				-0.2
896,255	-				+0.3
896,266	-				-1.0
896,287	+				+0.1
896,299	+				-2.4
896,307	-				-0.5
896,307	-				-1.7
896,310	-				-0.2
896,328	+				-0.2
896,458	+		HMPREF1058_RS09370	0.15	+1.7
896,472	+		HMPREF1058_RS09370	0.19	+1.6
896,513	+		HMPREF1058_RS09370	0.31	+1.9
896,549	+		HMPREF1058_RS09370	0.42	+1.5
896,608	-		HMPREF1058_RS09370	0.59	+1.0
896,608	-		HMPREF1058_RS09370	0.59	+0.7
896,687	+		HMPREF1058_RS09370	0.82	+1.8
896,720	+				+1.7
896,720	+				+0.8
896,720	+				-0.5
896,775	-				-1.2
896,836	+				-0.3
896,900	+				+2.3
897,347	+				+3.9
897,413	+				+2.2