Experiment: beta-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04685 and HMPREF1058_RS04680 are separated by 35 nucleotides HMPREF1058_RS04680 and HMPREF1058_RS04675 are separated by 107 nucleotides
HMPREF1058_RS04685: HMPREF1058_RS04685 - glycine cleavage system aminomethyltransferase GcvT, at 334,147 to 335,232
_RS04685
HMPREF1058_RS04680: HMPREF1058_RS04680 - peptidase T, at 335,268 to 336,488
_RS04680
HMPREF1058_RS04675: HMPREF1058_RS04675 - amidophosphoribosyltransferase, at 336,596 to 338,002
_RS04675
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 334.297 kb on + strand, within HMPREF1058_RS04685 at 334.306 kb on + strand, within HMPREF1058_RS04685 at 334.328 kb on - strand, within HMPREF1058_RS04685 at 334.494 kb on + strand, within HMPREF1058_RS04685 at 334.495 kb on - strand, within HMPREF1058_RS04685 at 334.495 kb on - strand, within HMPREF1058_RS04685 at 334.495 kb on - strand, within HMPREF1058_RS04685 at 334.548 kb on + strand, within HMPREF1058_RS04685 at 334.570 kb on - strand, within HMPREF1058_RS04685 at 334.575 kb on + strand, within HMPREF1058_RS04685 at 334.644 kb on - strand, within HMPREF1058_RS04685 at 334.730 kb on + strand, within HMPREF1058_RS04685 at 334.731 kb on - strand, within HMPREF1058_RS04685 at 334.914 kb on - strand at 334.934 kb on + strand, within HMPREF1058_RS04685 at 334.935 kb on - strand, within HMPREF1058_RS04685 at 334.935 kb on - strand, within HMPREF1058_RS04685 at 334.936 kb on + strand, within HMPREF1058_RS04685 at 334.936 kb on + strand, within HMPREF1058_RS04685 at 334.983 kb on + strand, within HMPREF1058_RS04685 at 334.984 kb on - strand, within HMPREF1058_RS04685 at 334.985 kb on + strand, within HMPREF1058_RS04685 at 335.104 kb on + strand, within HMPREF1058_RS04685 at 335.117 kb on - strand, within HMPREF1058_RS04685 at 335.117 kb on - strand, within HMPREF1058_RS04685 at 335.148 kb on - strand at 335.154 kb on + strand at 335.161 kb on - strand at 335.163 kb on + strand at 335.164 kb on - strand at 335.164 kb on - strand at 335.238 kb on + strand at 335.239 kb on - strand at 335.252 kb on - strand at 335.265 kb on + strand at 335.270 kb on - strand at 335.379 kb on - strand at 335.447 kb on + strand, within HMPREF1058_RS04680 at 335.448 kb on - strand, within HMPREF1058_RS04680 at 335.448 kb on - strand, within HMPREF1058_RS04680 at 335.531 kb on - strand, within HMPREF1058_RS04680 at 335.534 kb on - strand, within HMPREF1058_RS04680 at 335.579 kb on + strand, within HMPREF1058_RS04680 at 335.606 kb on + strand, within HMPREF1058_RS04680 at 335.652 kb on + strand, within HMPREF1058_RS04680 at 335.652 kb on + strand, within HMPREF1058_RS04680 at 335.653 kb on - strand, within HMPREF1058_RS04680 at 335.654 kb on + strand, within HMPREF1058_RS04680 at 335.654 kb on + strand, within HMPREF1058_RS04680 at 335.654 kb on + strand, within HMPREF1058_RS04680 at 335.655 kb on - strand, within HMPREF1058_RS04680 at 335.656 kb on + strand, within HMPREF1058_RS04680 at 335.657 kb on - strand, within HMPREF1058_RS04680 at 335.667 kb on - strand, within HMPREF1058_RS04680 at 335.676 kb on + strand, within HMPREF1058_RS04680 at 335.726 kb on + strand, within HMPREF1058_RS04680 at 335.727 kb on - strand, within HMPREF1058_RS04680 at 335.820 kb on + strand, within HMPREF1058_RS04680 at 335.886 kb on + strand, within HMPREF1058_RS04680 at 335.907 kb on - strand, within HMPREF1058_RS04680 at 335.907 kb on - strand, within HMPREF1058_RS04680 at 335.907 kb on - strand, within HMPREF1058_RS04680 at 336.100 kb on - strand, within HMPREF1058_RS04680 at 336.105 kb on - strand, within HMPREF1058_RS04680 at 336.157 kb on - strand, within HMPREF1058_RS04680 at 336.159 kb on - strand, within HMPREF1058_RS04680 at 336.159 kb on - strand, within HMPREF1058_RS04680 at 336.159 kb on - strand, within HMPREF1058_RS04680 at 336.177 kb on + strand, within HMPREF1058_RS04680 at 336.180 kb on + strand, within HMPREF1058_RS04680 at 336.181 kb on - strand, within HMPREF1058_RS04680 at 336.278 kb on + strand, within HMPREF1058_RS04680 at 336.312 kb on - strand, within HMPREF1058_RS04680 at 336.312 kb on - strand, within HMPREF1058_RS04680 at 336.323 kb on - strand, within HMPREF1058_RS04680 at 336.378 kb on + strand at 336.378 kb on + strand at 336.410 kb on + strand at 336.410 kb on + strand at 336.456 kb on + strand at 336.457 kb on - strand at 336.457 kb on - strand at 336.477 kb on + strand at 336.477 kb on + strand at 336.478 kb on - strand at 336.506 kb on + strand at 336.513 kb on - strand at 336.522 kb on + strand at 336.576 kb on - strand at 336.632 kb on + strand at 336.632 kb on + strand at 336.632 kb on + strand at 336.633 kb on - strand at 336.941 kb on - strand, within HMPREF1058_RS04675 at 336.966 kb on - strand, within HMPREF1058_RS04675 at 336.968 kb on - strand, within HMPREF1058_RS04675 at 337.070 kb on - strand, within HMPREF1058_RS04675 at 337.096 kb on - strand, within HMPREF1058_RS04675 at 337.096 kb on - strand, within HMPREF1058_RS04675 at 337.096 kb on - strand, within HMPREF1058_RS04675 at 337.096 kb on - strand, within HMPREF1058_RS04675 at 337.158 kb on - strand, within HMPREF1058_RS04675 at 337.219 kb on + strand, within HMPREF1058_RS04675 at 337.219 kb on + strand, within HMPREF1058_RS04675 at 337.231 kb on + strand, within HMPREF1058_RS04675 at 337.231 kb on + strand at 337.231 kb on + strand, within HMPREF1058_RS04675 at 337.232 kb on - strand, within HMPREF1058_RS04675 at 337.264 kb on - strand, within HMPREF1058_RS04675 at 337.287 kb on + strand, within HMPREF1058_RS04675 at 337.367 kb on - strand, within HMPREF1058_RS04675 at 337.382 kb on + strand, within HMPREF1058_RS04675 at 337.460 kb on - strand, within HMPREF1058_RS04675
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/ml (C) remove 334,297 + HMPREF1058_RS04685 0.14 +0.9 334,306 + HMPREF1058_RS04685 0.15 -0.1 334,328 - HMPREF1058_RS04685 0.17 +2.8 334,494 + HMPREF1058_RS04685 0.32 +1.4 334,495 - HMPREF1058_RS04685 0.32 +2.7 334,495 - HMPREF1058_RS04685 0.32 +1.8 334,495 - HMPREF1058_RS04685 0.32 +0.5 334,548 + HMPREF1058_RS04685 0.37 +2.9 334,570 - HMPREF1058_RS04685 0.39 +2.5 334,575 + HMPREF1058_RS04685 0.39 +2.2 334,644 - HMPREF1058_RS04685 0.46 +2.4 334,730 + HMPREF1058_RS04685 0.54 +3.5 334,731 - HMPREF1058_RS04685 0.54 +1.6 334,914 - +4.5 334,934 + HMPREF1058_RS04685 0.72 +2.3 334,935 - HMPREF1058_RS04685 0.73 +2.0 334,935 - HMPREF1058_RS04685 0.73 +3.2 334,936 + HMPREF1058_RS04685 0.73 +0.1 334,936 + HMPREF1058_RS04685 0.73 +0.7 334,983 + HMPREF1058_RS04685 0.77 +0.9 334,984 - HMPREF1058_RS04685 0.77 +2.8 334,985 + HMPREF1058_RS04685 0.77 -1.3 335,104 + HMPREF1058_RS04685 0.88 -0.5 335,117 - HMPREF1058_RS04685 0.89 +1.0 335,117 - HMPREF1058_RS04685 0.89 +2.3 335,148 - +1.0 335,154 + +2.9 335,161 - +1.3 335,163 + +2.6 335,164 - +1.1 335,164 - -0.8 335,238 + +1.6 335,239 - +0.8 335,252 - +0.7 335,265 + +1.8 335,270 - +0.4 335,379 - +1.0 335,447 + HMPREF1058_RS04680 0.15 +2.4 335,448 - HMPREF1058_RS04680 0.15 +0.3 335,448 - HMPREF1058_RS04680 0.15 -0.0 335,531 - HMPREF1058_RS04680 0.22 +1.7 335,534 - HMPREF1058_RS04680 0.22 -0.8 335,579 + HMPREF1058_RS04680 0.25 +1.3 335,606 + HMPREF1058_RS04680 0.28 +0.6 335,652 + HMPREF1058_RS04680 0.31 +0.3 335,652 + HMPREF1058_RS04680 0.31 -0.4 335,653 - HMPREF1058_RS04680 0.32 +0.7 335,654 + HMPREF1058_RS04680 0.32 +2.4 335,654 + HMPREF1058_RS04680 0.32 +2.3 335,654 + HMPREF1058_RS04680 0.32 +2.4 335,655 - HMPREF1058_RS04680 0.32 +1.3 335,656 + HMPREF1058_RS04680 0.32 +4.0 335,657 - HMPREF1058_RS04680 0.32 +1.7 335,667 - HMPREF1058_RS04680 0.33 -1.2 335,676 + HMPREF1058_RS04680 0.33 +2.5 335,726 + HMPREF1058_RS04680 0.38 -1.8 335,727 - HMPREF1058_RS04680 0.38 -2.0 335,820 + HMPREF1058_RS04680 0.45 +3.0 335,886 + HMPREF1058_RS04680 0.51 +1.3 335,907 - HMPREF1058_RS04680 0.52 -1.8 335,907 - HMPREF1058_RS04680 0.52 -0.0 335,907 - HMPREF1058_RS04680 0.52 -0.2 336,100 - HMPREF1058_RS04680 0.68 +1.6 336,105 - HMPREF1058_RS04680 0.69 +1.6 336,157 - HMPREF1058_RS04680 0.73 -0.6 336,159 - HMPREF1058_RS04680 0.73 +0.3 336,159 - HMPREF1058_RS04680 0.73 +0.7 336,159 - HMPREF1058_RS04680 0.73 +0.7 336,177 + HMPREF1058_RS04680 0.74 +1.1 336,180 + HMPREF1058_RS04680 0.75 +0.3 336,181 - HMPREF1058_RS04680 0.75 -1.3 336,278 + HMPREF1058_RS04680 0.83 +1.7 336,312 - HMPREF1058_RS04680 0.86 +1.4 336,312 - HMPREF1058_RS04680 0.86 -0.3 336,323 - HMPREF1058_RS04680 0.86 +0.4 336,378 + +2.1 336,378 + +0.9 336,410 + +2.9 336,410 + +1.5 336,456 + +0.4 336,457 - +0.6 336,457 - +1.6 336,477 + +2.4 336,477 + +1.7 336,478 - -0.4 336,506 + +1.5 336,513 - +0.3 336,522 + +1.4 336,576 - +0.6 336,632 + -0.8 336,632 + +1.2 336,632 + +0.6 336,633 - +1.7 336,941 - HMPREF1058_RS04675 0.25 +0.9 336,966 - HMPREF1058_RS04675 0.26 +1.3 336,968 - HMPREF1058_RS04675 0.26 +3.9 337,070 - HMPREF1058_RS04675 0.34 -0.6 337,096 - HMPREF1058_RS04675 0.36 -0.0 337,096 - HMPREF1058_RS04675 0.36 -0.8 337,096 - HMPREF1058_RS04675 0.36 -0.2 337,096 - HMPREF1058_RS04675 0.36 +0.6 337,158 - HMPREF1058_RS04675 0.40 -0.7 337,219 + HMPREF1058_RS04675 0.44 -1.2 337,219 + HMPREF1058_RS04675 0.44 +1.2 337,231 + HMPREF1058_RS04675 0.45 -0.4 337,231 + -0.8 337,231 + HMPREF1058_RS04675 0.45 -2.0 337,232 - HMPREF1058_RS04675 0.45 +0.4 337,264 - HMPREF1058_RS04675 0.47 -0.1 337,287 + HMPREF1058_RS04675 0.49 -2.1 337,367 - HMPREF1058_RS04675 0.55 -0.2 337,382 + HMPREF1058_RS04675 0.56 +1.5 337,460 - HMPREF1058_RS04675 0.61 -0.0
Or see this region's nucleotide sequence