Experiment: beta-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03780 and HMPREF1058_RS03775 are separated by 124 nucleotides HMPREF1058_RS03775 and HMPREF1058_RS03770 are separated by 189 nucleotides HMPREF1058_RS03770 and HMPREF1058_RS03765 are separated by 158 nucleotides
HMPREF1058_RS03785: HMPREF1058_RS03785 - monofunctional biosynthetic peptidoglycan transglycosylase, at 186,721 to 187,443
_RS03785
HMPREF1058_RS03780: HMPREF1058_RS03780 - DUF1460 domain-containing protein, at 187,415 to 188,299
_RS03780
HMPREF1058_RS03775: HMPREF1058_RS03775 - biotin/lipoyl-binding protein, at 188,424 to 190,199
_RS03775
HMPREF1058_RS03770: HMPREF1058_RS03770 - RNA polymerase sigma factor, at 190,389 to 190,892
_RS03770
HMPREF1058_RS03765: HMPREF1058_RS03765 - trimeric intracellular cation channel family protein, at 191,051 to 191,665
_RS03765
Position (kb) 188
189
190
191 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 187.502 kb on + strand at 187.601 kb on - strand, within HMPREF1058_RS03780 at 187.607 kb on - strand, within HMPREF1058_RS03780 at 187.609 kb on + strand, within HMPREF1058_RS03780 at 187.610 kb on - strand, within HMPREF1058_RS03780 at 187.673 kb on - strand, within HMPREF1058_RS03780 at 187.680 kb on + strand, within HMPREF1058_RS03780 at 187.681 kb on - strand, within HMPREF1058_RS03780 at 187.784 kb on - strand, within HMPREF1058_RS03780 at 187.820 kb on + strand, within HMPREF1058_RS03780 at 187.832 kb on - strand, within HMPREF1058_RS03780 at 187.884 kb on + strand, within HMPREF1058_RS03780 at 187.903 kb on - strand, within HMPREF1058_RS03780 at 188.016 kb on - strand, within HMPREF1058_RS03780 at 188.023 kb on + strand, within HMPREF1058_RS03780 at 188.051 kb on + strand, within HMPREF1058_RS03780 at 188.052 kb on - strand, within HMPREF1058_RS03780 at 188.081 kb on - strand, within HMPREF1058_RS03780 at 188.131 kb on + strand, within HMPREF1058_RS03780 at 188.132 kb on - strand, within HMPREF1058_RS03780 at 188.132 kb on - strand, within HMPREF1058_RS03780 at 188.132 kb on - strand, within HMPREF1058_RS03780 at 188.138 kb on - strand, within HMPREF1058_RS03780 at 188.184 kb on - strand, within HMPREF1058_RS03780 at 188.186 kb on - strand, within HMPREF1058_RS03780 at 188.186 kb on - strand, within HMPREF1058_RS03780 at 188.223 kb on - strand at 188.267 kb on - strand at 188.312 kb on - strand at 188.319 kb on - strand at 188.408 kb on - strand at 188.408 kb on - strand at 188.408 kb on - strand at 188.410 kb on - strand at 188.411 kb on + strand at 188.411 kb on + strand at 188.411 kb on + strand at 188.412 kb on - strand at 188.412 kb on - strand at 188.412 kb on - strand at 188.452 kb on + strand at 188.457 kb on + strand at 188.457 kb on + strand at 188.459 kb on + strand at 188.478 kb on + strand at 188.479 kb on - strand at 188.510 kb on + strand at 188.511 kb on - strand at 188.543 kb on - strand at 188.757 kb on + strand, within HMPREF1058_RS03775 at 188.798 kb on - strand, within HMPREF1058_RS03775 at 189.029 kb on + strand, within HMPREF1058_RS03775 at 189.029 kb on + strand, within HMPREF1058_RS03775 at 189.029 kb on + strand, within HMPREF1058_RS03775 at 189.029 kb on + strand, within HMPREF1058_RS03775 at 189.030 kb on - strand, within HMPREF1058_RS03775 at 189.030 kb on - strand, within HMPREF1058_RS03775 at 189.077 kb on + strand, within HMPREF1058_RS03775 at 189.158 kb on - strand, within HMPREF1058_RS03775 at 189.204 kb on - strand, within HMPREF1058_RS03775 at 189.204 kb on - strand, within HMPREF1058_RS03775 at 189.323 kb on + strand, within HMPREF1058_RS03775 at 189.324 kb on - strand, within HMPREF1058_RS03775 at 189.368 kb on + strand, within HMPREF1058_RS03775 at 189.398 kb on + strand, within HMPREF1058_RS03775 at 189.400 kb on + strand, within HMPREF1058_RS03775 at 189.401 kb on - strand, within HMPREF1058_RS03775 at 189.401 kb on - strand, within HMPREF1058_RS03775 at 189.450 kb on - strand, within HMPREF1058_RS03775 at 189.548 kb on + strand, within HMPREF1058_RS03775 at 189.548 kb on + strand, within HMPREF1058_RS03775 at 189.591 kb on + strand, within HMPREF1058_RS03775 at 189.731 kb on - strand, within HMPREF1058_RS03775 at 189.740 kb on + strand, within HMPREF1058_RS03775 at 189.802 kb on + strand, within HMPREF1058_RS03775 at 189.803 kb on - strand, within HMPREF1058_RS03775 at 189.808 kb on - strand, within HMPREF1058_RS03775 at 189.825 kb on - strand, within HMPREF1058_RS03775 at 189.904 kb on - strand, within HMPREF1058_RS03775 at 189.957 kb on - strand, within HMPREF1058_RS03775 at 189.957 kb on - strand, within HMPREF1058_RS03775 at 189.982 kb on - strand, within HMPREF1058_RS03775 at 189.992 kb on + strand, within HMPREF1058_RS03775 at 189.998 kb on + strand, within HMPREF1058_RS03775 at 190.029 kb on + strand at 190.029 kb on + strand at 190.029 kb on + strand at 190.029 kb on + strand at 190.062 kb on - strand at 190.161 kb on - strand at 190.305 kb on - strand at 190.312 kb on + strand at 190.526 kb on + strand, within HMPREF1058_RS03770 at 190.555 kb on - strand, within HMPREF1058_RS03770 at 190.556 kb on + strand, within HMPREF1058_RS03770 at 190.556 kb on + strand, within HMPREF1058_RS03770 at 190.557 kb on - strand, within HMPREF1058_RS03770 at 190.557 kb on - strand, within HMPREF1058_RS03770 at 190.557 kb on - strand, within HMPREF1058_RS03770 at 190.564 kb on - strand, within HMPREF1058_RS03770 at 190.580 kb on - strand, within HMPREF1058_RS03770 at 190.580 kb on - strand, within HMPREF1058_RS03770 at 190.596 kb on - strand, within HMPREF1058_RS03770 at 190.620 kb on - strand, within HMPREF1058_RS03770 at 190.623 kb on + strand, within HMPREF1058_RS03770 at 190.623 kb on + strand, within HMPREF1058_RS03770 at 190.624 kb on - strand, within HMPREF1058_RS03770 at 190.624 kb on - strand, within HMPREF1058_RS03770 at 190.631 kb on - strand, within HMPREF1058_RS03770 at 190.644 kb on - strand, within HMPREF1058_RS03770 at 190.671 kb on + strand, within HMPREF1058_RS03770 at 190.712 kb on + strand, within HMPREF1058_RS03770 at 190.713 kb on - strand, within HMPREF1058_RS03770 at 190.714 kb on + strand, within HMPREF1058_RS03770 at 190.714 kb on + strand, within HMPREF1058_RS03770 at 190.714 kb on + strand, within HMPREF1058_RS03770 at 190.747 kb on + strand, within HMPREF1058_RS03770 at 190.747 kb on + strand, within HMPREF1058_RS03770 at 190.747 kb on + strand, within HMPREF1058_RS03770 at 190.747 kb on + strand, within HMPREF1058_RS03770 at 190.748 kb on - strand, within HMPREF1058_RS03770 at 190.748 kb on - strand, within HMPREF1058_RS03770 at 190.843 kb on - strand at 190.880 kb on + strand at 190.892 kb on + strand at 191.079 kb on - strand at 191.087 kb on - strand at 191.125 kb on + strand, within HMPREF1058_RS03765 at 191.126 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.136 kb on - strand, within HMPREF1058_RS03765 at 191.177 kb on + strand, within HMPREF1058_RS03765
Per-strain Table
Position Strand Gene LocusTag Fraction beta-Cyclodextrin 2.5 mg/ml (C) remove 187,502 + -0.2 187,601 - HMPREF1058_RS03780 0.21 +2.3 187,607 - HMPREF1058_RS03780 0.22 +1.2 187,609 + HMPREF1058_RS03780 0.22 -0.1 187,610 - HMPREF1058_RS03780 0.22 +1.1 187,673 - HMPREF1058_RS03780 0.29 +2.0 187,680 + HMPREF1058_RS03780 0.30 -4.0 187,681 - HMPREF1058_RS03780 0.30 -0.1 187,784 - HMPREF1058_RS03780 0.42 -1.1 187,820 + HMPREF1058_RS03780 0.46 -0.7 187,832 - HMPREF1058_RS03780 0.47 +0.7 187,884 + HMPREF1058_RS03780 0.53 -2.3 187,903 - HMPREF1058_RS03780 0.55 -1.9 188,016 - HMPREF1058_RS03780 0.68 +2.1 188,023 + HMPREF1058_RS03780 0.69 -1.3 188,051 + HMPREF1058_RS03780 0.72 +0.1 188,052 - HMPREF1058_RS03780 0.72 +1.5 188,081 - HMPREF1058_RS03780 0.75 +0.4 188,131 + HMPREF1058_RS03780 0.81 +0.1 188,132 - HMPREF1058_RS03780 0.81 -0.1 188,132 - HMPREF1058_RS03780 0.81 +1.1 188,132 - HMPREF1058_RS03780 0.81 -0.7 188,138 - HMPREF1058_RS03780 0.82 -1.7 188,184 - HMPREF1058_RS03780 0.87 +3.3 188,186 - HMPREF1058_RS03780 0.87 +0.1 188,186 - HMPREF1058_RS03780 0.87 +0.9 188,223 - +0.8 188,267 - -1.3 188,312 - -1.6 188,319 - +0.0 188,408 - +0.1 188,408 - +0.2 188,408 - -0.8 188,410 - -0.7 188,411 + -1.9 188,411 + +0.9 188,411 + +1.3 188,412 - -0.7 188,412 - +1.3 188,412 - +0.7 188,452 + +3.0 188,457 + +1.3 188,457 + +1.0 188,459 + +0.6 188,478 + +0.5 188,479 - +2.0 188,510 + +0.4 188,511 - +0.4 188,543 - +1.5 188,757 + HMPREF1058_RS03775 0.19 +0.7 188,798 - HMPREF1058_RS03775 0.21 +1.8 189,029 + HMPREF1058_RS03775 0.34 +2.0 189,029 + HMPREF1058_RS03775 0.34 +3.2 189,029 + HMPREF1058_RS03775 0.34 +0.8 189,029 + HMPREF1058_RS03775 0.34 +0.5 189,030 - HMPREF1058_RS03775 0.34 +0.9 189,030 - HMPREF1058_RS03775 0.34 +1.4 189,077 + HMPREF1058_RS03775 0.37 -1.3 189,158 - HMPREF1058_RS03775 0.41 +1.3 189,204 - HMPREF1058_RS03775 0.44 +2.8 189,204 - HMPREF1058_RS03775 0.44 -0.5 189,323 + HMPREF1058_RS03775 0.51 +0.2 189,324 - HMPREF1058_RS03775 0.51 +3.6 189,368 + HMPREF1058_RS03775 0.53 +0.7 189,398 + HMPREF1058_RS03775 0.55 +2.6 189,400 + HMPREF1058_RS03775 0.55 +1.2 189,401 - HMPREF1058_RS03775 0.55 +2.5 189,401 - HMPREF1058_RS03775 0.55 -0.0 189,450 - HMPREF1058_RS03775 0.58 +0.6 189,548 + HMPREF1058_RS03775 0.63 +1.5 189,548 + HMPREF1058_RS03775 0.63 +1.7 189,591 + HMPREF1058_RS03775 0.66 +0.9 189,731 - HMPREF1058_RS03775 0.74 +1.5 189,740 + HMPREF1058_RS03775 0.74 +1.9 189,802 + HMPREF1058_RS03775 0.78 +0.4 189,803 - HMPREF1058_RS03775 0.78 -0.3 189,808 - HMPREF1058_RS03775 0.78 -1.6 189,825 - HMPREF1058_RS03775 0.79 -0.2 189,904 - HMPREF1058_RS03775 0.83 +1.6 189,957 - HMPREF1058_RS03775 0.86 +0.4 189,957 - HMPREF1058_RS03775 0.86 +1.7 189,982 - HMPREF1058_RS03775 0.88 +0.8 189,992 + HMPREF1058_RS03775 0.88 -2.0 189,998 + HMPREF1058_RS03775 0.89 +2.3 190,029 + +4.2 190,029 + +3.3 190,029 + +2.4 190,029 + +1.1 190,062 - +1.1 190,161 - +1.0 190,305 - -1.4 190,312 + +0.9 190,526 + HMPREF1058_RS03770 0.27 -0.2 190,555 - HMPREF1058_RS03770 0.33 -1.1 190,556 + HMPREF1058_RS03770 0.33 -0.3 190,556 + HMPREF1058_RS03770 0.33 +1.4 190,557 - HMPREF1058_RS03770 0.33 -1.1 190,557 - HMPREF1058_RS03770 0.33 +0.6 190,557 - HMPREF1058_RS03770 0.33 -0.2 190,564 - HMPREF1058_RS03770 0.35 +4.6 190,580 - HMPREF1058_RS03770 0.38 +1.3 190,580 - HMPREF1058_RS03770 0.38 +0.7 190,596 - HMPREF1058_RS03770 0.41 -0.8 190,620 - HMPREF1058_RS03770 0.46 +0.7 190,623 + HMPREF1058_RS03770 0.46 -0.6 190,623 + HMPREF1058_RS03770 0.46 +1.9 190,624 - HMPREF1058_RS03770 0.47 +1.8 190,624 - HMPREF1058_RS03770 0.47 +0.4 190,631 - HMPREF1058_RS03770 0.48 -1.5 190,644 - HMPREF1058_RS03770 0.51 +1.3 190,671 + HMPREF1058_RS03770 0.56 -0.7 190,712 + HMPREF1058_RS03770 0.64 +0.7 190,713 - HMPREF1058_RS03770 0.64 +0.3 190,714 + HMPREF1058_RS03770 0.64 -1.9 190,714 + HMPREF1058_RS03770 0.64 +0.8 190,714 + HMPREF1058_RS03770 0.64 +1.3 190,747 + HMPREF1058_RS03770 0.71 -0.0 190,747 + HMPREF1058_RS03770 0.71 -0.7 190,747 + HMPREF1058_RS03770 0.71 -1.0 190,747 + HMPREF1058_RS03770 0.71 +0.7 190,748 - HMPREF1058_RS03770 0.71 -0.3 190,748 - HMPREF1058_RS03770 0.71 +1.1 190,843 - +0.3 190,880 + -0.9 190,892 + +0.7 191,079 - -1.9 191,087 - +0.8 191,125 + HMPREF1058_RS03765 0.12 -0.4 191,126 - HMPREF1058_RS03765 0.12 -1.1 191,129 - HMPREF1058_RS03765 0.13 -0.1 191,129 - HMPREF1058_RS03765 0.13 +0.7 191,129 - HMPREF1058_RS03765 0.13 -0.1 191,136 - HMPREF1058_RS03765 0.14 -0.2 191,177 + HMPREF1058_RS03765 0.20 -0.4
Or see this region's nucleotide sequence