Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02570

Experiment: beta-Cyclodextrin 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	beta-Cyclodextrin 2.5 mg/ml (C)
150,455	-		HMPREF1058_RS02580	0.86	-0.7
150,666	-				-0.6
150,677	+				+1.6
150,677	+				-0.2
150,678	-				+1.9
150,679	+				-0.8
150,679	+				-0.8
150,680	-				+1.5
150,680	-				-0.5
150,680	-				-1.6
150,680	-				+0.1
150,828	+		HMPREF1058_RS02575	0.25	-0.4
150,829	-		HMPREF1058_RS02575	0.25	+1.2
150,988	+		HMPREF1058_RS02575	0.53	-1.2
151,012	-		HMPREF1058_RS02575	0.57	+1.1
151,014	+		HMPREF1058_RS02575	0.57	+0.2
151,015	-		HMPREF1058_RS02575	0.57	-2.0
151,015	-		HMPREF1058_RS02575	0.57	-4.1
151,017	-		HMPREF1058_RS02575	0.58	-0.2
151,132	+		HMPREF1058_RS02575	0.77	-1.8
151,166	+		HMPREF1058_RS02575	0.83	+0.8
151,170	+		HMPREF1058_RS02575	0.84	-0.7
151,193	+		HMPREF1058_RS02575	0.88	-0.4
151,359	+				+0.8
151,382	+				+1.5
151,420	+				+0.2
151,459	+				-2.4
151,515	+		HMPREF1058_RS02570	0.11	-0.7
151,515	+		HMPREF1058_RS02570	0.11	-0.7
151,531	-		HMPREF1058_RS02570	0.14	+0.7
151,551	-		HMPREF1058_RS02570	0.18	-0.6
151,562	+		HMPREF1058_RS02570	0.20	-0.5
151,622	-				-0.8
151,673	-		HMPREF1058_RS02570	0.40	-2.6
151,699	-		HMPREF1058_RS02570	0.45	-2.2
151,711	+		HMPREF1058_RS02570	0.47	-1.3
151,722	-		HMPREF1058_RS02570	0.49	-2.7
151,764	-		HMPREF1058_RS02570	0.57	+1.0
151,777	+		HMPREF1058_RS02570	0.60	-1.5
151,777	+		HMPREF1058_RS02570	0.60	-1.9
151,778	-		HMPREF1058_RS02570	0.60	-3.3
151,778	-		HMPREF1058_RS02570	0.60	-2.4
151,778	-		HMPREF1058_RS02570	0.60	-2.1
151,820	+		HMPREF1058_RS02570	0.68	-1.9
151,910	+		HMPREF1058_RS02570	0.84	-2.8
151,937	+		HMPREF1058_RS02570	0.89	+0.1
151,937	+		HMPREF1058_RS02570	0.89	-1.0
151,942	+				+0.6
151,943	-				-0.5
151,943	-				-1.2
151,943	-				-1.4
151,943	-				-2.9
151,943	-				-2.1
151,957	+				-1.1
152,044	-				-2.4
152,257	+				-0.5
152,297	-		HMPREF1058_RS02565	0.13	+3.9
152,297	-		HMPREF1058_RS02565	0.13	+0.0
152,297	-		HMPREF1058_RS02565	0.13	-1.2
152,299	-		HMPREF1058_RS02565	0.13	-0.1
152,299	-		HMPREF1058_RS02565	0.13	-0.1
152,344	-		HMPREF1058_RS02565	0.16	-1.2
152,439	-		HMPREF1058_RS02565	0.23	+0.0
152,497	+		HMPREF1058_RS02565	0.27	-1.3
152,497	+		HMPREF1058_RS02565	0.27	-2.0
152,548	+		HMPREF1058_RS02565	0.30	+1.2
152,552	+		HMPREF1058_RS02565	0.31	+0.7
152,552	+		HMPREF1058_RS02565	0.31	+1.8
152,553	-		HMPREF1058_RS02565	0.31	-1.4
152,578	-		HMPREF1058_RS02565	0.32	-0.8
152,590	-		HMPREF1058_RS02565	0.33	-1.2
152,633	+		HMPREF1058_RS02565	0.36	-0.9
152,794	+		HMPREF1058_RS02565	0.48	+2.9
152,845	+		HMPREF1058_RS02565	0.51	-2.2
152,878	+		HMPREF1058_RS02565	0.54	-0.3
152,879	-		HMPREF1058_RS02565	0.54	-0.6