Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14715

Experiment: Tara gum 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tara gum 2.5 mg/ml (C)
1,122,215	-		HMPREF1058_RS14720	0.82	-0.6
1,122,239	+		HMPREF1058_RS14720	0.83	-0.3
1,122,268	+		HMPREF1058_RS14720	0.84	+1.0
1,122,271	+		HMPREF1058_RS14720	0.84	-2.7
1,122,291	+		HMPREF1058_RS14720	0.85	-0.4
1,122,296	+		HMPREF1058_RS14720	0.85	-0.4
1,122,296	+		HMPREF1058_RS14720	0.85	-2.4
1,122,396	-		HMPREF1058_RS14720	0.89	+0.6
1,122,396	-		HMPREF1058_RS14720	0.89	-3.1
1,122,426	-				+2.0
1,122,432	+				-2.9
1,122,432	+				+0.1
1,122,432	+				+0.5
1,122,433	-				-1.1
1,122,433	-				+1.3
1,122,433	-				+0.7
1,122,514	+				-0.0
1,122,515	-				+0.2
1,122,522	-				-0.9
1,122,564	-				+0.8
1,122,602	+				+0.0
1,122,661	+				+1.0
1,122,661	+				+0.4
1,122,662	-				-1.4
1,122,769	-				+0.6
1,122,845	+				+0.6
1,122,845	+				-0.1
1,122,847	+				-0.1
1,122,847	+				-0.0
1,122,848	-				-0.8
1,122,848	-				-1.8
1,122,893	+				+0.2
1,122,937	+				-1.4
1,122,937	+				+0.9
1,122,938	-				-2.4
1,122,938	-				+0.1
1,122,938	-				-0.5
1,122,938	-				-0.5
1,122,940	+				+0.6
1,122,940	+				+0.2
1,122,941	-				+0.2
1,122,954	-				-1.0
1,123,018	-				+0.6
1,123,169	+				-0.7
1,123,202	+				-0.5
1,123,202	+				-2.0
1,123,202	+				-1.0
1,123,203	-				-1.5
1,123,204	+				-0.6
1,123,205	-				-0.4
1,123,208	+				-1.9
1,123,209	-				-0.3
1,123,209	-				-0.3
1,123,209	-				+0.5
1,123,280	-				-0.8
1,123,283	+				-0.0
1,123,283	+				-1.4
1,123,464	-		HMPREF1058_RS14715	0.21	+0.6
1,123,464	-		HMPREF1058_RS14715	0.21	+0.7
1,123,543	+		HMPREF1058_RS14715	0.26	-2.9
1,123,543	+		HMPREF1058_RS14715	0.26	-1.9
1,123,543	+		HMPREF1058_RS14715	0.26	-2.1
1,123,543	+		HMPREF1058_RS14715	0.26	-2.2
1,123,543	+		HMPREF1058_RS14715	0.26	-0.7
1,123,544	-		HMPREF1058_RS14715	0.26	-2.1
1,123,544	-		HMPREF1058_RS14715	0.26	-1.9
1,123,545	+		HMPREF1058_RS14715	0.26	-2.8
1,123,545	+		HMPREF1058_RS14715	0.26	-1.0
1,123,668	+		HMPREF1058_RS14715	0.35	-1.4
1,123,699	-		HMPREF1058_RS14715	0.38	-0.1
1,123,724	+		HMPREF1058_RS14715	0.40	+0.2
1,123,755	-		HMPREF1058_RS14715	0.42	-0.1
1,123,869	+		HMPREF1058_RS14715	0.50	-1.2
1,123,869	+		HMPREF1058_RS14715	0.50	-0.4
1,123,909	+		HMPREF1058_RS14715	0.53	+0.3
1,123,909	+		HMPREF1058_RS14715	0.53	-0.2
1,123,909	+		HMPREF1058_RS14715	0.53	-1.8
1,123,911	+		HMPREF1058_RS14715	0.53	-1.7
1,123,915	+		HMPREF1058_RS14715	0.54	-0.8
1,124,175	+		HMPREF1058_RS14715	0.73	-1.3
1,124,175	+		HMPREF1058_RS14715	0.73	-0.7
1,124,175	+		HMPREF1058_RS14715	0.73	+0.7
1,124,176	-		HMPREF1058_RS14715	0.73	-1.4
1,124,390	+		HMPREF1058_RS14715	0.88	+0.2
1,124,461	-				-1.1
1,124,478	+				-0.4
1,124,519	+				+0.0
1,124,519	+				-0.8
1,124,553	+				+0.6
1,124,586	+				+1.4
1,124,586	+				-1.6
1,124,665	+		HMPREF1058_RS14710	0.12	-1.8
1,124,666	-		HMPREF1058_RS14710	0.12	-2.0
1,124,728	+		HMPREF1058_RS14710	0.21	-1.0
1,124,731	-		HMPREF1058_RS14710	0.22	-0.6
1,124,731	-		HMPREF1058_RS14710	0.22	-0.1
1,124,858	-		HMPREF1058_RS14710	0.41	-1.4
1,124,945	+		HMPREF1058_RS14710	0.55	-1.5
1,125,098	+		HMPREF1058_RS14710	0.78	-0.0
1,125,110	-		HMPREF1058_RS14710	0.80	-0.8
1,125,126	+		HMPREF1058_RS14710	0.82	+0.3
1,125,126	+		HMPREF1058_RS14710	0.82	-0.3
1,125,127	-		HMPREF1058_RS14710	0.82	+0.8
1,125,180	-				-2.4
1,125,181	+				-0.2
1,125,181	+				-1.0
1,125,181	+				-0.9
1,125,239	-				-2.3
1,125,345	-				-3.0
1,125,380	-				-1.8
1,125,380	-				-0.0
1,125,380	-				-1.7
1,125,402	+				-0.5
1,125,402	+				-0.7
1,125,426	+		HMPREF1058_RS14705	0.11	-1.0
1,125,428	+		HMPREF1058_RS14705	0.11	+2.6
1,125,428	+		HMPREF1058_RS14705	0.11	-1.1
1,125,429	-		HMPREF1058_RS14705	0.11	+0.2
1,125,469	+		HMPREF1058_RS14705	0.14	+2.0
1,125,469	+		HMPREF1058_RS14705	0.14	-0.5
1,125,470	-		HMPREF1058_RS14705	0.14	-0.1
1,125,471	+		HMPREF1058_RS14705	0.14	+0.1
1,125,472	-		HMPREF1058_RS14705	0.14	+0.0
1,125,472	-		HMPREF1058_RS14705	0.14	+0.3
1,125,472	-		HMPREF1058_RS14705	0.14	-1.5
1,125,474	-		HMPREF1058_RS14705	0.14	+0.9
1,125,476	+		HMPREF1058_RS14705	0.14	-1.1
1,125,481	+		HMPREF1058_RS14705	0.14	+0.7
1,125,482	-		HMPREF1058_RS14705	0.14	-1.7
1,125,550	+		HMPREF1058_RS14705	0.18	-1.3