Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06105

Experiment: Tara gum 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tara gum 2.5 mg/ml (C)
656	+		HMPREF1058_RS21480	0.24	-1.7
772	-		HMPREF1058_RS21480	0.76	-1.2
922	-				+0.5
979	-				-0.7
983	+				+1.6
983	+				-1.3
1,005	+				+1.4
1,005	+				-1.1
1,006	-				-0.4
1,006	-				+0.6
1,020	+				-0.2
1,023	+				-1.9
1,024	-				-0.9
1,029	-				+1.9
1,043	+				-2.7
1,044	-				+0.2
1,093	+				+0.3
1,105	+				-2.6
1,105	+				-0.5
1,183	-				-0.1
1,231	+				+1.3
1,232	-				+1.5
1,308	+				-0.8
1,333	+				+1.3
1,334	-				-1.1
1,334	-				+1.7
1,356	+				-0.4
1,357	-				-2.6
1,375	+				-3.3
1,380	+				-0.4
1,380	+				-0.8
1,380	+				-2.4
1,608	+				-0.1
1,657	+				-1.0
1,658	-				-2.5
1,664	+				-1.0
1,696	+				+0.9
1,697	-				-0.4
1,708	+				-1.8
1,708	+				-1.5
1,709	-				+1.9
1,709	-				-0.0
1,719	+				+1.1
1,719	+				+0.6
1,747	-				-2.7
1,749	+		HMPREF1058_RS06105	0.10	-1.7
1,758	+		HMPREF1058_RS06105	0.11	-2.2
1,827	-		HMPREF1058_RS06105	0.17	-2.5
1,880	-		HMPREF1058_RS06105	0.21	+0.9
1,968	+		HMPREF1058_RS06105	0.28	-0.4
1,971	-		HMPREF1058_RS06105	0.29	+1.5
1,971	-		HMPREF1058_RS06105	0.29	-0.8
1,971	-		HMPREF1058_RS06105	0.29	+0.3
1,980	+		HMPREF1058_RS06105	0.29	-1.7
1,981	-		HMPREF1058_RS06105	0.29	-2.1
1,981	-		HMPREF1058_RS06105	0.29	-2.3
2,161	+		HMPREF1058_RS06105	0.45	-1.5
2,259	+		HMPREF1058_RS06105	0.53	+1.9
2,259	+		HMPREF1058_RS06105	0.53	-1.9
2,276	+				+1.1
2,280	+		HMPREF1058_RS06105	0.55	+2.9
2,282	+		HMPREF1058_RS06105	0.55	-0.7
2,282	+		HMPREF1058_RS06105	0.55	-0.7
2,293	-		HMPREF1058_RS06105	0.56	+0.4
2,296	+		HMPREF1058_RS06105	0.56	-0.3
2,332	+		HMPREF1058_RS06105	0.59	-1.5
2,333	-		HMPREF1058_RS06105	0.59	+1.0
2,454	-		HMPREF1058_RS06105	0.69	-1.8
2,454	-		HMPREF1058_RS06105	0.69	+1.1
2,462	+		HMPREF1058_RS06105	0.70	-1.2
2,463	-		HMPREF1058_RS06105	0.70	+0.3
2,464	+		HMPREF1058_RS06105	0.70	-1.5
2,464	+		HMPREF1058_RS06105	0.70	-1.3
2,693	+		HMPREF1058_RS06105	0.89	-2.0
2,693	+		HMPREF1058_RS06105	0.89	+0.8
2,693	+		HMPREF1058_RS06105	0.89	-0.8
2,694	-		HMPREF1058_RS06105	0.89	+1.1
2,694	-		HMPREF1058_RS06105	0.89	-2.9
2,694	-		HMPREF1058_RS06105	0.89	-0.3
2,699	+		HMPREF1058_RS06105	0.90	-2.5
2,699	+		HMPREF1058_RS06105	0.90	-0.7
2,700	-		HMPREF1058_RS06105	0.90	-0.7
2,700	-		HMPREF1058_RS06105	0.90	+0.5
2,703	+				+0.0
2,704	-				-2.2
2,704	-				+0.1
2,705	+				-1.0
2,746	+				-1.1
2,791	+				+2.2
2,797	+				+1.9
2,801	-				-0.9
2,802	+				+0.9
2,803	-				-1.9
2,803	-				-2.3
2,806	-				-1.9
2,911	+				+0.9
2,912	-				-2.0
2,913	+				-1.1
2,913	+				-0.1
2,913	+				-1.3
2,913	+				+0.6
2,914	-				-0.7
2,995	-		HMPREF1058_RS06100	0.16	-0.8
3,194	-		HMPREF1058_RS06100	0.33	-3.1
3,194	-		HMPREF1058_RS06100	0.33	-2.0
3,216	+		HMPREF1058_RS06100	0.35	-0.4
3,355	-		HMPREF1058_RS06100	0.47	+0.9
3,355	-		HMPREF1058_RS06100	0.47	-0.7
3,359	-		HMPREF1058_RS06100	0.47	-2.7
3,377	-		HMPREF1058_RS06100	0.49	+0.3
3,377	-		HMPREF1058_RS06100	0.49	-0.8
3,409	+		HMPREF1058_RS06100	0.52	-0.9
3,409	+		HMPREF1058_RS06100	0.52	-0.4
3,415	-		HMPREF1058_RS06100	0.52	+0.9
3,485	+		HMPREF1058_RS06100	0.58	-0.9
3,501	-		HMPREF1058_RS06100	0.59	-1.4
3,604	-		HMPREF1058_RS06100	0.68	-0.5
3,616	-		HMPREF1058_RS06100	0.69	-1.3
3,684	+		HMPREF1058_RS06100	0.75	-2.0
3,780	-		HMPREF1058_RS06100	0.83	-3.3
3,799	+		HMPREF1058_RS06100	0.85	+0.5
3,800	-		HMPREF1058_RS06100	0.85	-0.5