Experiment: Tara gum 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05435 and HMPREF1058_RS05430 are separated by 50 nucleotides HMPREF1058_RS05430 and HMPREF1058_RS05425 are separated by 28 nucleotides HMPREF1058_RS05425 and HMPREF1058_RS05420 are separated by 13 nucleotides HMPREF1058_RS05420 and HMPREF1058_RS05415 are separated by 76 nucleotides
HMPREF1058_RS05435: HMPREF1058_RS05435 - MarC family protein, at 167,078 to 167,725
_RS05435
HMPREF1058_RS05430: HMPREF1058_RS05430 - ferritin, at 167,776 to 168,258
_RS05430
HMPREF1058_RS05425: HMPREF1058_RS05425 - class I fructose-bisphosphate aldolase, at 168,287 to 169,336
_RS05425
HMPREF1058_RS05420: HMPREF1058_RS05420 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 169,350 to 170,099
_RS05420
HMPREF1058_RS05415: HMPREF1058_RS05415 - Hsp20/alpha crystallin family protein, at 170,176 to 170,604
_RS05415
Position (kb) 168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 167.318 kb on - strand, within HMPREF1058_RS05435 at 167.344 kb on + strand, within HMPREF1058_RS05435 at 167.345 kb on - strand, within HMPREF1058_RS05435 at 167.410 kb on + strand, within HMPREF1058_RS05435 at 167.472 kb on + strand, within HMPREF1058_RS05435 at 167.514 kb on + strand, within HMPREF1058_RS05435 at 167.736 kb on + strand at 167.825 kb on + strand, within HMPREF1058_RS05430 at 167.847 kb on - strand, within HMPREF1058_RS05430 at 167.936 kb on - strand, within HMPREF1058_RS05430 at 167.951 kb on - strand, within HMPREF1058_RS05430 at 168.093 kb on - strand, within HMPREF1058_RS05430 at 168.174 kb on - strand, within HMPREF1058_RS05430 at 168.225 kb on + strand at 168.257 kb on - strand at 168.284 kb on - strand at 168.304 kb on - strand at 168.327 kb on - strand at 168.343 kb on + strand at 168.364 kb on + strand at 168.390 kb on + strand at 168.391 kb on - strand at 168.395 kb on - strand, within HMPREF1058_RS05425 at 168.421 kb on + strand, within HMPREF1058_RS05425 at 168.422 kb on - strand, within HMPREF1058_RS05425 at 168.422 kb on - strand, within HMPREF1058_RS05425 at 168.423 kb on + strand, within HMPREF1058_RS05425 at 168.424 kb on - strand, within HMPREF1058_RS05425 at 168.514 kb on - strand, within HMPREF1058_RS05425 at 168.514 kb on - strand, within HMPREF1058_RS05425 at 168.646 kb on + strand, within HMPREF1058_RS05425 at 168.647 kb on - strand, within HMPREF1058_RS05425 at 168.823 kb on - strand, within HMPREF1058_RS05425 at 168.868 kb on + strand, within HMPREF1058_RS05425 at 168.877 kb on - strand, within HMPREF1058_RS05425 at 168.877 kb on - strand, within HMPREF1058_RS05425 at 168.885 kb on - strand, within HMPREF1058_RS05425 at 169.057 kb on + strand, within HMPREF1058_RS05425 at 169.057 kb on + strand, within HMPREF1058_RS05425 at 169.061 kb on + strand, within HMPREF1058_RS05425 at 169.207 kb on - strand, within HMPREF1058_RS05425 at 169.306 kb on - strand at 169.306 kb on - strand at 169.345 kb on + strand at 169.345 kb on + strand at 169.360 kb on + strand at 169.370 kb on - strand at 169.370 kb on - strand at 169.433 kb on - strand, within HMPREF1058_RS05420 at 169.510 kb on - strand, within HMPREF1058_RS05420 at 169.640 kb on + strand, within HMPREF1058_RS05420 at 169.678 kb on + strand, within HMPREF1058_RS05420 at 169.679 kb on - strand, within HMPREF1058_RS05420 at 169.699 kb on - strand, within HMPREF1058_RS05420 at 169.815 kb on - strand, within HMPREF1058_RS05420 at 169.867 kb on - strand, within HMPREF1058_RS05420 at 169.950 kb on - strand, within HMPREF1058_RS05420 at 169.984 kb on - strand, within HMPREF1058_RS05420 at 170.148 kb on + strand at 170.303 kb on - strand, within HMPREF1058_RS05415 at 170.303 kb on - strand, within HMPREF1058_RS05415
Per-strain Table
Position Strand Gene LocusTag Fraction Tara gum 2.5 mg/ml (C) remove 167,318 - HMPREF1058_RS05435 0.37 -3.1 167,344 + HMPREF1058_RS05435 0.41 -0.2 167,345 - HMPREF1058_RS05435 0.41 +0.5 167,410 + HMPREF1058_RS05435 0.51 +0.3 167,472 + HMPREF1058_RS05435 0.61 +0.1 167,514 + HMPREF1058_RS05435 0.67 +1.9 167,736 + +1.2 167,825 + HMPREF1058_RS05430 0.10 -0.9 167,847 - HMPREF1058_RS05430 0.15 +2.8 167,936 - HMPREF1058_RS05430 0.33 -0.6 167,951 - HMPREF1058_RS05430 0.36 +0.5 168,093 - HMPREF1058_RS05430 0.66 -1.3 168,174 - HMPREF1058_RS05430 0.82 +0.2 168,225 + -0.1 168,257 - +2.9 168,284 - -3.3 168,304 - -1.5 168,327 - +0.3 168,343 + -2.0 168,364 + +0.8 168,390 + +0.1 168,391 - +1.6 168,395 - HMPREF1058_RS05425 0.10 -2.4 168,421 + HMPREF1058_RS05425 0.13 +0.4 168,422 - HMPREF1058_RS05425 0.13 +0.3 168,422 - HMPREF1058_RS05425 0.13 -2.6 168,423 + HMPREF1058_RS05425 0.13 -2.5 168,424 - HMPREF1058_RS05425 0.13 -2.0 168,514 - HMPREF1058_RS05425 0.22 -2.1 168,514 - HMPREF1058_RS05425 0.22 -0.4 168,646 + HMPREF1058_RS05425 0.34 -1.3 168,647 - HMPREF1058_RS05425 0.34 -0.7 168,823 - HMPREF1058_RS05425 0.51 +0.3 168,868 + HMPREF1058_RS05425 0.55 +1.3 168,877 - HMPREF1058_RS05425 0.56 -1.4 168,877 - HMPREF1058_RS05425 0.56 -0.7 168,885 - HMPREF1058_RS05425 0.57 -1.3 169,057 + HMPREF1058_RS05425 0.73 -0.3 169,057 + HMPREF1058_RS05425 0.73 -1.0 169,061 + HMPREF1058_RS05425 0.74 +0.9 169,207 - HMPREF1058_RS05425 0.88 -2.4 169,306 - -0.1 169,306 - +0.9 169,345 + -1.1 169,345 + +0.4 169,360 + +0.1 169,370 - +0.8 169,370 - -2.6 169,433 - HMPREF1058_RS05420 0.11 -2.0 169,510 - HMPREF1058_RS05420 0.21 -1.7 169,640 + HMPREF1058_RS05420 0.39 -2.0 169,678 + HMPREF1058_RS05420 0.44 +1.2 169,679 - HMPREF1058_RS05420 0.44 +0.5 169,699 - HMPREF1058_RS05420 0.47 -3.3 169,815 - HMPREF1058_RS05420 0.62 -0.3 169,867 - HMPREF1058_RS05420 0.69 -1.2 169,950 - HMPREF1058_RS05420 0.80 -0.7 169,984 - HMPREF1058_RS05420 0.85 -0.4 170,148 + +1.6 170,303 - HMPREF1058_RS05415 0.30 -2.2 170,303 - HMPREF1058_RS05415 0.30 +1.5
Or see this region's nucleotide sequence